Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 51739 | 0.68 | 0.56434 |
Target: 5'- gCCGAGGGCGCCAagcaguauucgagcUCGACgaAGCUUUc-- -3' miRNA: 3'- -GGCUUCCGUGGU--------------AGCUG--UCGGAGcua -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 23674 | 0.69 | 0.528003 |
Target: 5'- gCCGGuauccacGGcGCGCCgggcuucacaucgauGUCGACuGCCUCGAUg -3' miRNA: 3'- -GGCU-------UC-CGUGG---------------UAGCUGuCGGAGCUA- -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 31763 | 0.69 | 0.50392 |
Target: 5'- aCUGggGGCGCCAaCGccugcCGGCCUCu-- -3' miRNA: 3'- -GGCuuCCGUGGUaGCu----GUCGGAGcua -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 42944 | 0.69 | 0.50392 |
Target: 5'- cUCGcGGGC-CgGcCGGCAGCCUCGAa -3' miRNA: 3'- -GGCuUCCGuGgUaGCUGUCGGAGCUa -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 13180 | 0.7 | 0.473251 |
Target: 5'- aCCGucagcGAGGCugCGUCGGCGGCggUCGGc -3' miRNA: 3'- -GGC-----UUCCGugGUAGCUGUCGg-AGCUa -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 28331 | 0.7 | 0.443549 |
Target: 5'- aCCGAuccGGCACCAgUCG-CAGCagUCGAUg -3' miRNA: 3'- -GGCUu--CCGUGGU-AGCuGUCGg-AGCUA- -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 56178 | 0.7 | 0.474258 |
Target: 5'- cUCGAuGGCACCuucaauccggaaaaCGGCAGCCUCGc- -3' miRNA: 3'- -GGCUuCCGUGGua------------GCUGUCGGAGCua -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 26042 | 0.72 | 0.387464 |
Target: 5'- gCCGAAGGCACCAaCGcCAGCaaUGGUc -3' miRNA: 3'- -GGCUUCCGUGGUaGCuGUCGgaGCUA- -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 56251 | 0.72 | 0.344434 |
Target: 5'- uUGAAGGUGCCAUCGAggaaCAGCUcCGAUc -3' miRNA: 3'- gGCUUCCGUGGUAGCU----GUCGGaGCUA- -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 19002 | 0.72 | 0.344434 |
Target: 5'- aCGgcGGCugCAcgCGGCuGGCCUCGAa -3' miRNA: 3'- gGCuuCCGugGUa-GCUG-UCGGAGCUa -5' |
|||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 49168 | 1.07 | 0.001297 |
Target: 5'- aCCGAAGGCACCAUCGACAGCCUCGAUc -3' miRNA: 3'- -GGCUUCCGUGGUAGCUGUCGGAGCUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home