miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12481 3' -55.5 NC_003324.1 + 28331 0.7 0.443549
Target:  5'- aCCGAuccGGCACCAgUCG-CAGCagUCGAUg -3'
miRNA:   3'- -GGCUu--CCGUGGU-AGCuGUCGg-AGCUA- -5'
12481 3' -55.5 NC_003324.1 + 13180 0.7 0.473251
Target:  5'- aCCGucagcGAGGCugCGUCGGCGGCggUCGGc -3'
miRNA:   3'- -GGC-----UUCCGugGUAGCUGUCGg-AGCUa -5'
12481 3' -55.5 NC_003324.1 + 42944 0.69 0.50392
Target:  5'- cUCGcGGGC-CgGcCGGCAGCCUCGAa -3'
miRNA:   3'- -GGCuUCCGuGgUaGCUGUCGGAGCUa -5'
12481 3' -55.5 NC_003324.1 + 39415 0.68 0.578416
Target:  5'- uCCGAAGGCucGCCAgCG-CGGCUucUCGAc -3'
miRNA:   3'- -GGCUUCCG--UGGUaGCuGUCGG--AGCUa -5'
12481 3' -55.5 NC_003324.1 + 22099 0.68 0.589294
Target:  5'- gCGcAAGGCugCGcUCGACAugcGCCUCGu- -3'
miRNA:   3'- gGC-UUCCGugGU-AGCUGU---CGGAGCua -5'
12481 3' -55.5 NC_003324.1 + 55286 0.67 0.644046
Target:  5'- gCGAucagucauuGGGCACCAUCGACAuGgCgugggCGAg -3'
miRNA:   3'- gGCU---------UCCGUGGUAGCUGU-CgGa----GCUa -5'
12481 3' -55.5 NC_003324.1 + 30563 0.67 0.676844
Target:  5'- uCCGAGGGC-CUGcUCGGCGGCgC-CGAUu -3'
miRNA:   3'- -GGCUUCCGuGGU-AGCUGUCG-GaGCUA- -5'
12481 3' -55.5 NC_003324.1 + 1482 0.66 0.687706
Target:  5'- gCGAAGaacgcccaGCACCGUCGGC-GCaUCGAUg -3'
miRNA:   3'- gGCUUC--------CGUGGUAGCUGuCGgAGCUA- -5'
12481 3' -55.5 NC_003324.1 + 48575 0.66 0.709261
Target:  5'- aUGAGGGCAaggacagcggCGUCG-CAGCgCUCGAUg -3'
miRNA:   3'- gGCUUCCGUg---------GUAGCuGUCG-GAGCUA- -5'
12481 3' -55.5 NC_003324.1 + 30384 0.66 0.719931
Target:  5'- uCCGGcgucgcuacAGGCAUguUCGGCGGCUUgGGc -3'
miRNA:   3'- -GGCU---------UCCGUGguAGCUGUCGGAgCUa -5'
12481 3' -55.5 NC_003324.1 + 56251 0.72 0.344434
Target:  5'- uUGAAGGUGCCAUCGAggaaCAGCUcCGAUc -3'
miRNA:   3'- gGCUUCCGUGGUAGCU----GUCGGaGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.