miRNA display CGI


Results 21 - 29 of 29 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12487 3' -58 NC_003324.1 + 2520 0.7 0.402202
Target:  5'- uUGGUGggGAacaAGCCGCcGGCG-UCGg -3'
miRNA:   3'- gGCCACuuCUag-UCGGCG-CCGCuGGC- -5'
12487 3' -58 NC_003324.1 + 54497 0.7 0.38468
Target:  5'- -gGGUGAGGggCAuCCGCGaagccugcagcGCGACCGg -3'
miRNA:   3'- ggCCACUUCuaGUcGGCGC-----------CGCUGGC- -5'
12487 3' -58 NC_003324.1 + 36065 0.7 0.383817
Target:  5'- aCGGUGAuuaucgaAGAgccCGGCUGUGGCGAgUGa -3'
miRNA:   3'- gGCCACU-------UCUa--GUCGGCGCCGCUgGC- -5'
12487 3' -58 NC_003324.1 + 17153 0.71 0.359363
Target:  5'- gCGGUGAAGGUgAauGCCgguGUGGCGAUCa -3'
miRNA:   3'- gGCCACUUCUAgU--CGG---CGCCGCUGGc -5'
12487 3' -58 NC_003324.1 + 51133 0.72 0.304936
Target:  5'- gCCGGacuaUGAAGGUgAGCCGUcuucaggcaGGUGACCu -3'
miRNA:   3'- -GGCC----ACUUCUAgUCGGCG---------CCGCUGGc -5'
12487 3' -58 NC_003324.1 + 15239 0.72 0.288489
Target:  5'- aCCGGcgaUGGAGAUCGGCggcgagccuuuucaCGUGGCG-CCGu -3'
miRNA:   3'- -GGCC---ACUUCUAGUCG--------------GCGCCGCuGGC- -5'
12487 3' -58 NC_003324.1 + 13163 0.75 0.194456
Target:  5'- gUCGGcGgcGGUCGGCgGCGGCGguACCGg -3'
miRNA:   3'- -GGCCaCuuCUAGUCGgCGCCGC--UGGC- -5'
12487 3' -58 NC_003324.1 + 11230 0.77 0.134368
Target:  5'- gCCGGaaaUGGAGAUCAGCCGgacaCGGCuACCGu -3'
miRNA:   3'- -GGCC---ACUUCUAGUCGGC----GCCGcUGGC- -5'
12487 3' -58 NC_003324.1 + 51405 1.11 0.000531
Target:  5'- uCCGGUGAAGAUCAGCCGCGGCGACCGg -3'
miRNA:   3'- -GGCCACUUCUAGUCGGCGCCGCUGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.