miRNA display CGI


Results 41 - 45 of 45 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12497 3' -49.4 NC_003324.1 + 27060 0.72 0.674046
Target:  5'- cGCGaCGCGGCGUUaccguugUGGCcgGUGcgGCu -3'
miRNA:   3'- aCGC-GUGUUGUAA-------ACCGuaCGCuaCG- -5'
12497 3' -49.4 NC_003324.1 + 33379 0.72 0.663663
Target:  5'- cGCGCGCAACuccggccacUGGCGgagaacgcuUGCGAUGa -3'
miRNA:   3'- aCGCGUGUUGuaa------ACCGU---------ACGCUACg -5'
12497 3' -49.4 NC_003324.1 + 42385 0.74 0.548431
Target:  5'- gGCGCcCGGCAcgUGGCAgGCGgcGCa -3'
miRNA:   3'- aCGCGuGUUGUaaACCGUaCGCuaCG- -5'
12497 3' -49.4 NC_003324.1 + 35526 0.76 0.482125
Target:  5'- cUGCGCAcCGACGUUggUGGC-UGUGAucUGCg -3'
miRNA:   3'- -ACGCGU-GUUGUAA--ACCGuACGCU--ACG- -5'
12497 3' -49.4 NC_003324.1 + 56523 1.14 0.0017
Target:  5'- cUGCGCACAACAUUUGGCAUGCGAUGCg -3'
miRNA:   3'- -ACGCGUGUUGUAAACCGUACGCUACG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.