miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12499 5' -60 NC_003324.1 + 1534 0.66 0.507132
Target:  5'- aUCcGCGCCGGauacgUCGcGCCGuuuCCUUUGCg -3'
miRNA:   3'- gAGuUGCGGCC-----AGCaCGGC---GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 30481 0.66 0.507132
Target:  5'- aUCGGCGCCGc-CGaGCagGCCCUCGg -3'
miRNA:   3'- gAGUUGCGGCcaGCaCGg-CGGGAGCg -5'
12499 5' -60 NC_003324.1 + 50673 0.66 0.497175
Target:  5'- gUCGAgGgCGG-CGUGCCaGCCCUUu- -3'
miRNA:   3'- gAGUUgCgGCCaGCACGG-CGGGAGcg -5'
12499 5' -60 NC_003324.1 + 50431 0.66 0.497175
Target:  5'- --aGGCGCUGGgCGUGgUGCagCUCGCa -3'
miRNA:   3'- gagUUGCGGCCaGCACgGCGg-GAGCG- -5'
12499 5' -60 NC_003324.1 + 47653 0.66 0.487307
Target:  5'- gCUCGACGgCgagGGUCGauCgGCCCUCGUc -3'
miRNA:   3'- -GAGUUGCgG---CCAGCacGgCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 40338 0.66 0.487307
Target:  5'- uUCGGCGCUGcagcaGUCuUGCCGgCUUUCGCu -3'
miRNA:   3'- gAGUUGCGGC-----CAGcACGGC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 38244 0.66 0.487307
Target:  5'- uUCAGCGCCGGaa-UGCCGa--UCGCc -3'
miRNA:   3'- gAGUUGCGGCCagcACGGCgggAGCG- -5'
12499 5' -60 NC_003324.1 + 23405 0.66 0.477532
Target:  5'- gCUCGGCuuucucguugGCCGcGUCgGUGgCGCCCUgGUu -3'
miRNA:   3'- -GAGUUG----------CGGC-CAG-CACgGCGGGAgCG- -5'
12499 5' -60 NC_003324.1 + 17816 0.66 0.477532
Target:  5'- cCUCAcgGCGCgcauuCGGg-GUGUCGCCCUUGa -3'
miRNA:   3'- -GAGU--UGCG-----GCCagCACGGCGGGAGCg -5'
12499 5' -60 NC_003324.1 + 11147 0.67 0.467855
Target:  5'- -gCuuCGCCGGUCuG-GCgGCCggCUCGCa -3'
miRNA:   3'- gaGuuGCGGCCAG-CaCGgCGG--GAGCG- -5'
12499 5' -60 NC_003324.1 + 3358 0.67 0.467855
Target:  5'- gUUuAUGCCgacGGUUGccGCCGCCCUcCGCu -3'
miRNA:   3'- gAGuUGCGG---CCAGCa-CGGCGGGA-GCG- -5'
12499 5' -60 NC_003324.1 + 30372 0.67 0.45828
Target:  5'- --uGGCGUCGcccUCGgccaUGCCGCCCUCGa -3'
miRNA:   3'- gagUUGCGGCc--AGC----ACGGCGGGAGCg -5'
12499 5' -60 NC_003324.1 + 23234 0.67 0.45828
Target:  5'- gUgGGCGCCGGcaagaCGUuuGCCGCCaUUGCa -3'
miRNA:   3'- gAgUUGCGGCCa----GCA--CGGCGGgAGCG- -5'
12499 5' -60 NC_003324.1 + 38099 0.67 0.45828
Target:  5'- gUCGGCGCCGuGcUgGUGaCCGUUCUUGUg -3'
miRNA:   3'- gAGUUGCGGC-C-AgCAC-GGCGGGAGCG- -5'
12499 5' -60 NC_003324.1 + 30059 0.67 0.45828
Target:  5'- aUCAcgcCGCCGGUCGcgacaccgGCCGCugcggcuuCCUCGa -3'
miRNA:   3'- gAGUu--GCGGCCAGCa-------CGGCG--------GGAGCg -5'
12499 5' -60 NC_003324.1 + 5451 0.67 0.454479
Target:  5'- aUCGACGCUGGgucaggcaggcggCGUcGcCCGCCCcaCGCu -3'
miRNA:   3'- gAGUUGCGGCCa------------GCA-C-GGCGGGa-GCG- -5'
12499 5' -60 NC_003324.1 + 54150 0.67 0.44881
Target:  5'- gUCGA-GCCGGUCG-GCCGauuCCgcCGCa -3'
miRNA:   3'- gAGUUgCGGCCAGCaCGGCg--GGa-GCG- -5'
12499 5' -60 NC_003324.1 + 24834 0.67 0.44881
Target:  5'- aUC-GCGCCgacaaGGUCG-GCCGUCUUgGCa -3'
miRNA:   3'- gAGuUGCGG-----CCAGCaCGGCGGGAgCG- -5'
12499 5' -60 NC_003324.1 + 18492 0.67 0.43945
Target:  5'- -cCAGCGUCGccuUCGUGUgGuUCCUCGCa -3'
miRNA:   3'- gaGUUGCGGCc--AGCACGgC-GGGAGCG- -5'
12499 5' -60 NC_003324.1 + 49602 0.67 0.430202
Target:  5'- cCUCGcCGCucgauaCGGcCGagagugccagaaUGCCGCCCUCGUu -3'
miRNA:   3'- -GAGUuGCG------GCCaGC------------ACGGCGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.