Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12508 | 3' | -55.9 | NC_003345.1 | + | 33059 | 0.72 | 0.447855 |
Target: 5'- cCGaGGgCUAC--GCCGGGccGACCGCCa -3' miRNA: 3'- aGC-CCgGAUGuaUGGCCCu-UUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 10560 | 0.71 | 0.486574 |
Target: 5'- aCGGGCCgACcgggAUUGGGAAGUCGCCc -3' miRNA: 3'- aGCCCGGaUGua--UGGCCCUUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 33115 | 0.71 | 0.486574 |
Target: 5'- -gGGGCCUACGUGuucCCGGcGuucAACgGCCu -3' miRNA: 3'- agCCCGGAUGUAU---GGCC-Cu--UUGgCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 62952 | 0.71 | 0.496502 |
Target: 5'- cCGGGUCgag--GCCGGGAAcAgCGCCg -3' miRNA: 3'- aGCCCGGauguaUGGCCCUU-UgGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 31952 | 0.69 | 0.599816 |
Target: 5'- uUCGGGCgaACcgaaGCCGGGAAGuCCGaCUc -3' miRNA: 3'- -AGCCCGgaUGua--UGGCCCUUU-GGC-GG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 72691 | 0.68 | 0.67297 |
Target: 5'- uUCGGaGCCUcagaagaACGaggGCCGGaGAAucgaccacuACCGCCu -3' miRNA: 3'- -AGCC-CGGA-------UGUa--UGGCC-CUU---------UGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 55467 | 0.68 | 0.674025 |
Target: 5'- uUCGGGCCgg-AUGCCGuaguaGAAuagacacuaccACCGCCa -3' miRNA: 3'- -AGCCCGGaugUAUGGCc----CUU-----------UGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 29820 | 0.67 | 0.705462 |
Target: 5'- cUCGGucGUCUACuGUACCGGGugcGCC-CCg -3' miRNA: 3'- -AGCC--CGGAUG-UAUGGCCCuu-UGGcGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 829 | 0.67 | 0.715821 |
Target: 5'- aCGGGCCg----ACCGGGGAgacggaACCGg- -3' miRNA: 3'- aGCCCGGauguaUGGCCCUU------UGGCgg -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 24582 | 0.67 | 0.715821 |
Target: 5'- cUC-GGCg-GCAggacGCCGGGAggUCGCCc -3' miRNA: 3'- -AGcCCGgaUGUa---UGGCCCUuuGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 31411 | 0.67 | 0.726103 |
Target: 5'- gUCGGGUugCUACGUucccCCGG--AAUCGCCa -3' miRNA: 3'- -AGCCCG--GAUGUAu---GGCCcuUUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 73515 | 0.67 | 0.736297 |
Target: 5'- gCGGGCCUuCAUGCuCGaaGAccacAAUCGCCg -3' miRNA: 3'- aGCCCGGAuGUAUG-GCc-CU----UUGGCGG- -5' |
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12508 | 3' | -55.9 | NC_003345.1 | + | 75320 | 0.76 | 0.276698 |
Target: 5'- cUCGcGGCCccgguUAC--GCCGGGGAACCGCa -3' miRNA: 3'- -AGC-CCGG-----AUGuaUGGCCCUUUGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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