miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12526 3' -55 NC_003345.1 + 62713 0.65 0.847022
Target:  5'- cGCCCucgcuuucaucAGCGAGAGGAACcaCGCGCUc -3'
miRNA:   3'- cUGGGc----------UUGCUCUCCUUGucGUGCGG- -5'
12526 3' -55 NC_003345.1 + 76216 0.65 0.847022
Target:  5'- aGCCCGccuCGAuGAuGGugGGCACGCUc -3'
miRNA:   3'- cUGGGCuu-GCU-CUcCUugUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 26710 0.66 0.838548
Target:  5'- cGACCCGAagGCGGcGGGucgAGUugACGCCa -3'
miRNA:   3'- -CUGGGCU--UGCUcUCCuugUCG--UGCGG- -5'
12526 3' -55 NC_003345.1 + 50530 0.66 0.829868
Target:  5'- gGGCCacaaucGCGGGGGGAGCGGCAgaagacUGUCu -3'
miRNA:   3'- -CUGGgcu---UGCUCUCCUUGUCGU------GCGG- -5'
12526 3' -55 NC_003345.1 + 21807 0.66 0.829868
Target:  5'- --aCCGAGCGAGccgcuGGAGCcGCugaacCGCCc -3'
miRNA:   3'- cugGGCUUGCUCu----CCUUGuCGu----GCGG- -5'
12526 3' -55 NC_003345.1 + 33852 0.66 0.829868
Target:  5'- gGugUgGGACGAGGGGAugGaCuacgACGCCa -3'
miRNA:   3'- -CugGgCUUGCUCUCCUugUcG----UGCGG- -5'
12526 3' -55 NC_003345.1 + 32536 0.66 0.829868
Target:  5'- cGAgCCGGACGAGcGGAAgAuGCucaccgaguuCGCCa -3'
miRNA:   3'- -CUgGGCUUGCUCuCCUUgU-CGu---------GCGG- -5'
12526 3' -55 NC_003345.1 + 28024 0.66 0.829868
Target:  5'- ---aCGAACGAcGGGGAGCuuCACGCg -3'
miRNA:   3'- cuggGCUUGCU-CUCCUUGucGUGCGg -5'
12526 3' -55 NC_003345.1 + 57971 0.66 0.820992
Target:  5'- -cCCCGGACGGGAaguuaugggucGGuaguCGGCAgGCUa -3'
miRNA:   3'- cuGGGCUUGCUCU-----------CCuu--GUCGUgCGG- -5'
12526 3' -55 NC_003345.1 + 60739 0.66 0.820992
Target:  5'- -gUUCGGGCGcGGGGAugAGUAUGCg -3'
miRNA:   3'- cuGGGCUUGCuCUCCUugUCGUGCGg -5'
12526 3' -55 NC_003345.1 + 32403 0.66 0.811926
Target:  5'- --gUCGAACGucAGAacacGGGGCGGCGCGUCc -3'
miRNA:   3'- cugGGCUUGC--UCU----CCUUGUCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 14275 0.67 0.793269
Target:  5'- -cCCCGAcgaguACGGGAGuGGCuGGUACGCUg -3'
miRNA:   3'- cuGGGCU-----UGCUCUCcUUG-UCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 765 0.67 0.793269
Target:  5'- -cCCCGAACGGucGGGGGCggguaAGUACGUCu -3'
miRNA:   3'- cuGGGCUUGCUc-UCCUUG-----UCGUGCGG- -5'
12526 3' -55 NC_003345.1 + 72631 0.67 0.783696
Target:  5'- aGACCCucguGAACGuGAGGGuCGGUuCGCa -3'
miRNA:   3'- -CUGGG----CUUGCuCUCCUuGUCGuGCGg -5'
12526 3' -55 NC_003345.1 + 35285 0.67 0.783696
Target:  5'- aGGCCC-AAUGGGAGGcccGAgAGUuCGCCa -3'
miRNA:   3'- -CUGGGcUUGCUCUCC---UUgUCGuGCGG- -5'
12526 3' -55 NC_003345.1 + 67239 0.67 0.764113
Target:  5'- aGCCUGAACcGGAGGGccaccguCAGCGuauuuCGCCg -3'
miRNA:   3'- cUGGGCUUGcUCUCCUu------GUCGU-----GCGG- -5'
12526 3' -55 NC_003345.1 + 49210 0.67 0.754123
Target:  5'- -gUuuGAGCGcGAGGAugGGCAaaaagGCCg -3'
miRNA:   3'- cuGggCUUGCuCUCCUugUCGUg----CGG- -5'
12526 3' -55 NC_003345.1 + 53779 0.69 0.681485
Target:  5'- cGACCCucguGGCGGGGGuGAACGGCGuuucCGUCu -3'
miRNA:   3'- -CUGGGc---UUGCUCUC-CUUGUCGU----GCGG- -5'
12526 3' -55 NC_003345.1 + 51707 0.69 0.681485
Target:  5'- cACCgGAGCGAGAGaGuACGGCGagguCGUCg -3'
miRNA:   3'- cUGGgCUUGCUCUC-CuUGUCGU----GCGG- -5'
12526 3' -55 NC_003345.1 + 55552 0.69 0.681485
Target:  5'- cGGCCCGAACGgucguucucucGGAGGuAACGGCG-GUg -3'
miRNA:   3'- -CUGGGCUUGC-----------UCUCC-UUGUCGUgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.