miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12529 3' -51.5 NC_003345.1 + 67601 0.69 0.831746
Target:  5'- gGUCGggG-ACUCAa-GCUCGUauagaGUCCCa -3'
miRNA:   3'- -CAGCuuCuUGAGUcgUGAGCG-----UAGGG- -5'
12529 3' -51.5 NC_003345.1 + 7648 0.7 0.794165
Target:  5'- gGUCGAAGAACggAGCuACg-GCGUCCg -3'
miRNA:   3'- -CAGCUUCUUGagUCG-UGagCGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 69125 0.7 0.774312
Target:  5'- -cCGggGAACUC-GCcCUCGCucagcuucUCCCa -3'
miRNA:   3'- caGCuuCUUGAGuCGuGAGCGu-------AGGG- -5'
12529 3' -51.5 NC_003345.1 + 69999 0.71 0.753868
Target:  5'- uGUCaGAGAACUCGGC-CUCcuCGUCCUc -3'
miRNA:   3'- -CAGcUUCUUGAGUCGuGAGc-GUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 28406 0.71 0.722295
Target:  5'- cGUUGAGGAACaCGGCGa--GCGUCCUg -3'
miRNA:   3'- -CAGCUUCUUGaGUCGUgagCGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 70473 0.71 0.722295
Target:  5'- cUCGGAGAACUCGGCcuuCUC-UGUCCg -3'
miRNA:   3'- cAGCUUCUUGAGUCGu--GAGcGUAGGg -5'
12529 3' -51.5 NC_003345.1 + 6860 0.72 0.66802
Target:  5'- cUCGAAGAcCUCGGUAUcCaCAUCCCa -3'
miRNA:   3'- cAGCUUCUuGAGUCGUGaGcGUAGGG- -5'
12529 3' -51.5 NC_003345.1 + 29495 0.73 0.63496
Target:  5'- gGUCGuGGAAC-CAGCAgUCGgCGUCCa -3'
miRNA:   3'- -CAGCuUCUUGaGUCGUgAGC-GUAGGg -5'
12529 3' -51.5 NC_003345.1 + 46674 0.73 0.595277
Target:  5'- uUCGAGGAgucgaaccGC-CAGCACUCGUucgacguugaggaguAUCCCg -3'
miRNA:   3'- cAGCUUCU--------UGaGUCGUGAGCG---------------UAGGG- -5'
12529 3' -51.5 NC_003345.1 + 34915 0.85 0.137271
Target:  5'- aGUCGAAGGACUCAGCGCUCgGCuauggCUCa -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAG-CGua---GGG- -5'
12529 3' -51.5 NC_003345.1 + 20165 1.11 0.002566
Target:  5'- gGUCGAAGAACUCAGCACUCGCAUCCCc -3'
miRNA:   3'- -CAGCUUCUUGAGUCGUGAGCGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.