miRNA display CGI

Results 21 - 27 of 27 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12581	3'	-47.5	NC_003345.1	+	11327	0.67	0.99393
	Target:  5'- --uGACGGUGaGcaaGUUCGGgAAGUugGGu -3' miRNA:   3'- cuuUUGCCGC-C---UAAGCCaUUCAugCC- -5'
12581	3'	-47.5	NC_003345.1	+	457	0.66	0.995596
	Target:  5'- aGAGACGGaCGGA--CGGgGAGagACGGg -3' miRNA:   3'- cUUUUGCC-GCCUaaGCCaUUCa-UGCC- -5'
12581	3'	-47.5	NC_003345.1	+	40669	0.66	0.996868
	Target:  5'- cAAGACGGCGcGGUggUGGUcguuuguggguaGAGUGCGu -3' miRNA:   3'- cUUUUGCCGC-CUAa-GCCA------------UUCAUGCc -5'
12581	3'	-47.5	NC_003345.1	+	55609	0.66	0.996868
	Target:  5'- cGAAAACGGuuGGUUCgcuGGUGGugGCGGu -3' miRNA:   3'- -CUUUUGCCgcCUAAG---CCAUUcaUGCC- -5'
12581	3'	-47.5	NC_003345.1	+	66431	0.66	0.996868
	Target:  5'- ---uACGGCGcGAUgCGGgacagGAGUggcGCGGa -3' miRNA:   3'- cuuuUGCCGC-CUAaGCCa----UUCA---UGCC- -5'
12581	3'	-47.5	NC_003345.1	+	61142	0.66	0.997082
	Target:  5'- --cGGCGGCGGuaauggUCGGcGcucucggagugagacAGUACGGu -3' miRNA:   3'- cuuUUGCCGCCua----AGCCaU---------------UCAUGCC- -5'
12581	3'	-47.5	NC_003345.1	+	46710	0.66	0.99782
	Target:  5'- gGGGcgUGGCGGAa-CGGUGAGc-CGGg -3' miRNA:   3'- -CUUuuGCCGCCUaaGCCAUUCauGCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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