miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12606 3' -44.4 NC_003345.1 + 25212 0.65 0.999866
Target:  5'- -uUGCGaaaagacGCAUCgaCGggGgcAAGGUCg -3'
miRNA:   3'- uuAUGU-------UGUAGgaGCuuCuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 14657 0.66 0.999828
Target:  5'- --cGCucCGUCUUCGAGGAugggauagucGGGGUCg -3'
miRNA:   3'- uuaUGuuGUAGGAGCUUCUu---------UUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 15364 0.66 0.999828
Target:  5'- gGAUACAACAUCgUCGuucGAGAGuucGAGauaGUCa -3'
miRNA:   3'- -UUAUGUUGUAGgAGC---UUCUU---UUC---CAG- -5'
12606 3' -44.4 NC_003345.1 + 60537 0.66 0.999704
Target:  5'- --gGCggUguGUCCUCGGauAGAGAuucggGGGUCg -3'
miRNA:   3'- uuaUGuuG--UAGGAGCU--UCUUU-----UCCAG- -5'
12606 3' -44.4 NC_003345.1 + 10298 0.66 0.999704
Target:  5'- cGUGgGGCGUCgUCG-GGAGuuGGUCa -3'
miRNA:   3'- uUAUgUUGUAGgAGCuUCUUuuCCAG- -5'
12606 3' -44.4 NC_003345.1 + 23622 0.66 0.999704
Target:  5'- --cGCAAUAUCgUCGggGAgugccugccGAGcGGUCu -3'
miRNA:   3'- uuaUGUUGUAGgAGCuuCU---------UUU-CCAG- -5'
12606 3' -44.4 NC_003345.1 + 60919 0.66 0.999618
Target:  5'- --cAUAACGUCCcCGGccuGAAGGUCg -3'
miRNA:   3'- uuaUGUUGUAGGaGCUucuUUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 77024 0.67 0.999377
Target:  5'- uGUAUGGCGaCCUCGAAaaauacgaGAGAGGUCa -3'
miRNA:   3'- uUAUGUUGUaGGAGCUUc-------UUUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 31635 0.67 0.999213
Target:  5'- --aACAcCAUCaUCGAGGggGAGGa- -3'
miRNA:   3'- uuaUGUuGUAGgAGCUUCuuUUCCag -5'
12606 3' -44.4 NC_003345.1 + 53031 0.67 0.999213
Target:  5'- --gGCGAcCAUCCUCGGGugcGAGGUUg -3'
miRNA:   3'- uuaUGUU-GUAGGAGCUUcuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 20152 0.68 0.998773
Target:  5'- --aGCAcucGCAUCCcCGAuaccaucGggGAGGUCg -3'
miRNA:   3'- uuaUGU---UGUAGGaGCUu------CuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 52470 0.68 0.998284
Target:  5'- aGGUGCugAACAUCCUCGAugagauuguguacgaGGAAGuuGUCg -3'
miRNA:   3'- -UUAUG--UUGUAGGAGCU---------------UCUUUucCAG- -5'
12606 3' -44.4 NC_003345.1 + 66673 0.68 0.997248
Target:  5'- --aACGACcUCCUCGggGuuagcAAGGUa -3'
miRNA:   3'- uuaUGUUGuAGGAGCuuCuu---UUCCAg -5'
12606 3' -44.4 NC_003345.1 + 18060 0.68 0.997196
Target:  5'- --aGCAACGUCCUCGcccuuucGAGucGAGGg- -3'
miRNA:   3'- uuaUGUUGUAGGAGC-------UUCuuUUCCag -5'
12606 3' -44.4 NC_003345.1 + 24658 0.69 0.996685
Target:  5'- --gACGACcgcUCCUUGAuaGGAAcAGGUCg -3'
miRNA:   3'- uuaUGUUGu--AGGAGCU--UCUUuUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 73202 0.69 0.996624
Target:  5'- --aGCGAauCAUCCUCG-GGAAgccacacGAGGUCg -3'
miRNA:   3'- uuaUGUU--GUAGGAGCuUCUU-------UUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 75063 0.7 0.993404
Target:  5'- --cACGuuucaGUCCUCGAAGguAAGGUUu -3'
miRNA:   3'- uuaUGUug---UAGGAGCUUCuuUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 24572 0.7 0.993404
Target:  5'- --aGCGGuCGUCCUCGgcGGcaggacgccgGGAGGUCg -3'
miRNA:   3'- uuaUGUU-GUAGGAGCuuCU----------UUUCCAG- -5'
12606 3' -44.4 NC_003345.1 + 33267 0.7 0.993404
Target:  5'- -cUACGcUGUCCUCGAAGAAgGAGG-Cg -3'
miRNA:   3'- uuAUGUuGUAGGAGCUUCUU-UUCCaG- -5'
12606 3' -44.4 NC_003345.1 + 9840 0.7 0.992271
Target:  5'- -cUACGACGcCCUCGAAGAAGAaaUCc -3'
miRNA:   3'- uuAUGUUGUaGGAGCUUCUUUUccAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.