miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12607 3' -58.2 NC_003345.1 + 20416 0.66 0.695386
Target:  5'- uGCUGGAGuguUGAUGggguucacgaCGugGUUCGGCu -3'
miRNA:   3'- gCGGCCUCu--GCUACg---------GCugCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 52343 0.66 0.694358
Target:  5'- aGCCuGAGACGG-GCUacgacgaGACGCacgacuUCAGCg -3'
miRNA:   3'- gCGGcCUCUGCUaCGG-------CUGCG------AGUCG- -5'
12607 3' -58.2 NC_003345.1 + 57624 0.66 0.685073
Target:  5'- aCGuCCGaAGuCGAgGUCggGACGCUCAGCa -3'
miRNA:   3'- -GC-GGCcUCuGCUaCGG--CUGCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 35806 0.66 0.685073
Target:  5'- aGCUcaaaGAGGgGAUGCgGGCGUgUCAGCu -3'
miRNA:   3'- gCGGc---CUCUgCUACGgCUGCG-AGUCG- -5'
12607 3' -58.2 NC_003345.1 + 36935 0.66 0.685073
Target:  5'- -aCCGGAGACucaGCgGGCuGUUCAGCc -3'
miRNA:   3'- gcGGCCUCUGcuaCGgCUG-CGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 24623 0.66 0.668481
Target:  5'- aCGCCagcGGuGGCGAauaucauagcgagcGCCGugGUUCGGUg -3'
miRNA:   3'- -GCGG---CCuCUGCUa-------------CGGCugCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 19314 0.66 0.664319
Target:  5'- gCGUgGuGAGGCGAaGUCGAacgagauuguCGCUCAGUc -3'
miRNA:   3'- -GCGgC-CUCUGCUaCGGCU----------GCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 9380 0.66 0.664319
Target:  5'- -cCCGGaAGACcaaGCCGACGCUCuGg -3'
miRNA:   3'- gcGGCC-UCUGcuaCGGCUGCGAGuCg -5'
12607 3' -58.2 NC_003345.1 + 74562 0.67 0.643457
Target:  5'- gGCCGGAGuCGAa-CCGGCGUaagAGCg -3'
miRNA:   3'- gCGGCCUCuGCUacGGCUGCGag-UCG- -5'
12607 3' -58.2 NC_003345.1 + 53168 0.67 0.633007
Target:  5'- uCGCUGGAGGagcuUGCUGGaaugGUUCAGCu -3'
miRNA:   3'- -GCGGCCUCUgcu-ACGGCUg---CGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 71118 0.67 0.633007
Target:  5'- aGCCGGuuuCGA--CCGACGCUCAu- -3'
miRNA:   3'- gCGGCCucuGCUacGGCUGCGAGUcg -5'
12607 3' -58.2 NC_003345.1 + 61044 0.67 0.622556
Target:  5'- gCGCCGaccauuacCGccGCCGACGCUCGGg -3'
miRNA:   3'- -GCGGCcucu----GCuaCGGCUGCGAGUCg -5'
12607 3' -58.2 NC_003345.1 + 56053 0.67 0.612114
Target:  5'- gCGCUGGuGGgGGUGCUGGCGgUCuGa -3'
miRNA:   3'- -GCGGCCuCUgCUACGGCUGCgAGuCg -5'
12607 3' -58.2 NC_003345.1 + 55446 0.68 0.58091
Target:  5'- -aCCGGAGGgGGUGgCGGCgGUUCAGa -3'
miRNA:   3'- gcGGCCUCUgCUACgGCUG-CGAGUCg -5'
12607 3' -58.2 NC_003345.1 + 43232 0.68 0.579875
Target:  5'- aGCCGcgaaguauuccccGAaguuGugGAUGCUGGCGUUCAGg -3'
miRNA:   3'- gCGGC-------------CU----CugCUACGGCUGCGAGUCg -5'
12607 3' -58.2 NC_003345.1 + 62070 0.68 0.574704
Target:  5'- aGCCGGAGuagcUGAUggaagugaccgaauaGCCGGuCGCcuUCAGCg -3'
miRNA:   3'- gCGGCCUCu---GCUA---------------CGGCU-GCG--AGUCG- -5'
12607 3' -58.2 NC_003345.1 + 75410 0.68 0.560287
Target:  5'- -aCCGGGGccGCGAgGUCGGCGgUUCAGCc -3'
miRNA:   3'- gcGGCCUC--UGCUaCGGCUGC-GAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 71594 0.68 0.543935
Target:  5'- uCGUCGGGGGacggaagcucaaccuCGggGUCGAuuccagccCGCUCAGCg -3'
miRNA:   3'- -GCGGCCUCU---------------GCuaCGGCU--------GCGAGUCG- -5'
12607 3' -58.2 NC_003345.1 + 61146 0.68 0.539871
Target:  5'- gCGUCGGcGGCGGUaaugGUCGGCGCUCucggAGUg -3'
miRNA:   3'- -GCGGCCuCUGCUA----CGGCUGCGAG----UCG- -5'
12607 3' -58.2 NC_003345.1 + 37139 0.68 0.529757
Target:  5'- uGCUGGcGACGAUGuucguuuauCCGugGCUCuuuGUg -3'
miRNA:   3'- gCGGCCuCUGCUAC---------GGCugCGAGu--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.