Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12607 | 3' | -58.2 | NC_003345.1 | + | 74562 | 0.67 | 0.643457 |
Target: 5'- gGCCGGAGuCGAa-CCGGCGUaagAGCg -3' miRNA: 3'- gCGGCCUCuGCUacGGCUGCGag-UCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 9380 | 0.66 | 0.664319 |
Target: 5'- -cCCGGaAGACcaaGCCGACGCUCuGg -3' miRNA: 3'- gcGGCC-UCUGcuaCGGCUGCGAGuCg -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 19314 | 0.66 | 0.664319 |
Target: 5'- gCGUgGuGAGGCGAaGUCGAacgagauuguCGCUCAGUc -3' miRNA: 3'- -GCGgC-CUCUGCUaCGGCU----------GCGAGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 24623 | 0.66 | 0.668481 |
Target: 5'- aCGCCagcGGuGGCGAauaucauagcgagcGCCGugGUUCGGUg -3' miRNA: 3'- -GCGG---CCuCUGCUa-------------CGGCugCGAGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 36935 | 0.66 | 0.685073 |
Target: 5'- -aCCGGAGACucaGCgGGCuGUUCAGCc -3' miRNA: 3'- gcGGCCUCUGcuaCGgCUG-CGAGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 35806 | 0.66 | 0.685073 |
Target: 5'- aGCUcaaaGAGGgGAUGCgGGCGUgUCAGCu -3' miRNA: 3'- gCGGc---CUCUgCUACGgCUGCG-AGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 57624 | 0.66 | 0.685073 |
Target: 5'- aCGuCCGaAGuCGAgGUCggGACGCUCAGCa -3' miRNA: 3'- -GC-GGCcUCuGCUaCGG--CUGCGAGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 52343 | 0.66 | 0.694358 |
Target: 5'- aGCCuGAGACGG-GCUacgacgaGACGCacgacuUCAGCg -3' miRNA: 3'- gCGGcCUCUGCUaCGG-------CUGCG------AGUCG- -5' |
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12607 | 3' | -58.2 | NC_003345.1 | + | 20416 | 0.66 | 0.695386 |
Target: 5'- uGCUGGAGuguUGAUGggguucacgaCGugGUUCGGCu -3' miRNA: 3'- gCGGCCUCu--GCUACg---------GCugCGAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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