Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12617 | 3' | -56.6 | NC_003345.1 | + | 32773 | 0.66 | 0.785874 |
Target: 5'- cCGGUgCGAGAgaGCgGUCGGCgUugacaCCGCg -3' miRNA: 3'- aGCCA-GCUUUg-CGgCAGUCGgA-----GGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 47445 | 0.66 | 0.776354 |
Target: 5'- cUC-GUCGGAACagGUCGUCAGCCcCCu- -3' miRNA: 3'- -AGcCAGCUUUG--CGGCAGUCGGaGGcg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 67855 | 0.66 | 0.772508 |
Target: 5'- gUCGGUCGAugccgagugaacagAACGUCGU--GCCauuauagagugauUCCGCc -3' miRNA: 3'- -AGCCAGCU--------------UUGCGGCAguCGG-------------AGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 73067 | 0.66 | 0.766699 |
Target: 5'- uUCGGUgGGAACGCCGcgagaaCGGUCgCCa- -3' miRNA: 3'- -AGCCAgCUUUGCGGCa-----GUCGGaGGcg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 73613 | 0.66 | 0.766699 |
Target: 5'- -aGGcCGuAGGaguaGUCGUCAGCggCUCCGCg -3' miRNA: 3'- agCCaGC-UUUg---CGGCAGUCG--GAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 54043 | 0.66 | 0.765726 |
Target: 5'- gCGG-CGAGAacCGCgaGUCGGacgaaaaCCUCCGCg -3' miRNA: 3'- aGCCaGCUUU--GCGg-CAGUC-------GGAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 58041 | 0.66 | 0.756916 |
Target: 5'- uUUGGcUCGAAcgaGCCgGUCuGGUCUCUGCg -3' miRNA: 3'- -AGCC-AGCUUug-CGG-CAG-UCGGAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 58793 | 0.66 | 0.737011 |
Target: 5'- aUCGGagUGAacauauccacAACGCCGUCGugUUCCGCa -3' miRNA: 3'- -AGCCa-GCU----------UUGCGGCAGUcgGAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 43021 | 0.67 | 0.726909 |
Target: 5'- -aGGUCGAuAC-CUGUCAG-CUCaCGCu -3' miRNA: 3'- agCCAGCUuUGcGGCAGUCgGAG-GCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 72393 | 0.67 | 0.71672 |
Target: 5'- cUCGGUCGGGagaauACGCgGUCGGaa-CUGCu -3' miRNA: 3'- -AGCCAGCUU-----UGCGgCAGUCggaGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 21239 | 0.67 | 0.706454 |
Target: 5'- uUCcGUCGAuuaccuccACGUCGUCAGCgUCCa- -3' miRNA: 3'- -AGcCAGCUu-------UGCGGCAGUCGgAGGcg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 50102 | 0.67 | 0.706454 |
Target: 5'- gCGGUgGAGcuauuauCGuuGUCAGCC-CCGg -3' miRNA: 3'- aGCCAgCUUu------GCggCAGUCGGaGGCg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 62954 | 0.68 | 0.654323 |
Target: 5'- -gGGUCGAggccgggaacAGCGCCGacgaUAGCCagCGCa -3' miRNA: 3'- agCCAGCU----------UUGCGGCa---GUCGGagGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 77013 | 0.68 | 0.643803 |
Target: 5'- cUCGGUCGggGaGCUgGUCgAGCCaaUCCGg -3' miRNA: 3'- -AGCCAGCuuUgCGG-CAG-UCGG--AGGCg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 29213 | 0.68 | 0.622742 |
Target: 5'- uUCGGcuUCGuagaGCCaUCAGgCUCCGCg -3' miRNA: 3'- -AGCC--AGCuuugCGGcAGUCgGAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 63942 | 0.69 | 0.600662 |
Target: 5'- -aGGUCGAAGCGCagaGUgUAGUaauagcgauuaauCUCCGCu -3' miRNA: 3'- agCCAGCUUUGCGg--CA-GUCG-------------GAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 71025 | 0.69 | 0.591229 |
Target: 5'- gUCGGUCGAAACcggcuucggGCUGUCGuCgUCCGg -3' miRNA: 3'- -AGCCAGCUUUG---------CGGCAGUcGgAGGCg -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 75574 | 0.7 | 0.543523 |
Target: 5'- -gGGUCGAAGCucggcucaucGCCGUCuucucccccaccgagAacaGCCUCCGCc -3' miRNA: 3'- agCCAGCUUUG----------CGGCAG---------------U---CGGAGGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 34235 | 0.71 | 0.499127 |
Target: 5'- cUCGGggCGAAGCGCCcuUCGGCgUgCCGUc -3' miRNA: 3'- -AGCCa-GCUUUGCGGc-AGUCGgA-GGCG- -5' |
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12617 | 3' | -56.6 | NC_003345.1 | + | 33419 | 0.71 | 0.4698 |
Target: 5'- aUCGaGUCGGAaguaaACGUCGUUGGCCgcuUUCGCa -3' miRNA: 3'- -AGC-CAGCUU-----UGCGGCAGUCGG---AGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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