miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12619 5' -54 NC_003345.1 + 55688 0.66 0.876742
Target:  5'- aGGCuGAAG-UGCggaACCGGGUUgGCUc -3'
miRNA:   3'- -UCGcCUUCuACGag-UGGCUCAAgCGG- -5'
12619 5' -54 NC_003345.1 + 12403 0.66 0.876742
Target:  5'- gAGUGGGAGucGCUgACgGAGgacaaCGCCa -3'
miRNA:   3'- -UCGCCUUCuaCGAgUGgCUCaa---GCGG- -5'
12619 5' -54 NC_003345.1 + 21120 0.66 0.876742
Target:  5'- --aGGGAGAUGCgcuccucgaagUCGCCGcucgCGCCg -3'
miRNA:   3'- ucgCCUUCUACG-----------AGUGGCucaaGCGG- -5'
12619 5' -54 NC_003345.1 + 2108 0.66 0.869027
Target:  5'- uAGCGccGAuGGUGUUCACCGuauucucaacgaAG-UCGCCg -3'
miRNA:   3'- -UCGC--CUuCUACGAGUGGC------------UCaAGCGG- -5'
12619 5' -54 NC_003345.1 + 30276 0.66 0.866666
Target:  5'- cGGCGGAgaggauaugccccgAGcgGCcUACCGugguGGUUCGCUc -3'
miRNA:   3'- -UCGCCU--------------UCuaCGaGUGGC----UCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 16940 0.66 0.86188
Target:  5'- cGGCGGcuGAUGCUCuacaAUCGGGgaacguggcacgacCGCCg -3'
miRNA:   3'- -UCGCCuuCUACGAG----UGGCUCaa------------GCGG- -5'
12619 5' -54 NC_003345.1 + 7363 0.66 0.861075
Target:  5'- uGGCGGuguaAAGAcUGCgggaGCCGGGUUCGa- -3'
miRNA:   3'- -UCGCC----UUCU-ACGag--UGGCUCAAGCgg -5'
12619 5' -54 NC_003345.1 + 13463 0.66 0.859456
Target:  5'- uGUGGGAGGUGUggguuguaucgaCGCCGAGcUUGUCc -3'
miRNA:   3'- uCGCCUUCUACGa-----------GUGGCUCaAGCGG- -5'
12619 5' -54 NC_003345.1 + 58907 0.66 0.856191
Target:  5'- uGCGGAacacgacggcguuguGGAuaUGUUCAcuCCGAuUUCGCCu -3'
miRNA:   3'- uCGCCU---------------UCU--ACGAGU--GGCUcAAGCGG- -5'
12619 5' -54 NC_003345.1 + 23430 0.67 0.835859
Target:  5'- uGUGGAAG--GCau-CCGAGUUCGCg -3'
miRNA:   3'- uCGCCUUCuaCGaguGGCUCAAGCGg -5'
12619 5' -54 NC_003345.1 + 45033 0.67 0.827028
Target:  5'- gAGUGGAAca-GCUCAUCGAG-UCGUUu -3'
miRNA:   3'- -UCGCCUUcuaCGAGUGGCUCaAGCGG- -5'
12619 5' -54 NC_003345.1 + 7767 0.67 0.817999
Target:  5'- -aCGGAAGuUGCUaCACCGGa--CGCCg -3'
miRNA:   3'- ucGCCUUCuACGA-GUGGCUcaaGCGG- -5'
12619 5' -54 NC_003345.1 + 13406 0.67 0.817999
Target:  5'- cGGCGGAAca-----GCCGAGUUCGUCu -3'
miRNA:   3'- -UCGCCUUcuacgagUGGCUCAAGCGG- -5'
12619 5' -54 NC_003345.1 + 41346 0.67 0.80878
Target:  5'- aGGCcG-AGGUGCgcCACCGAGUUCGa- -3'
miRNA:   3'- -UCGcCuUCUACGa-GUGGCUCAAGCgg -5'
12619 5' -54 NC_003345.1 + 5446 0.67 0.80878
Target:  5'- uAGUGGAgauugAGuUGUUCACCGA---CGCCg -3'
miRNA:   3'- -UCGCCU-----UCuACGAGUGGCUcaaGCGG- -5'
12619 5' -54 NC_003345.1 + 75688 0.67 0.799383
Target:  5'- cGGUGGggGAgaagcgGCgaugaGCCGAGcUUCGaCCc -3'
miRNA:   3'- -UCGCCuuCUa-----CGag---UGGCUC-AAGC-GG- -5'
12619 5' -54 NC_003345.1 + 6341 0.69 0.729453
Target:  5'- aAGUGGggGAaGCUgACuguCGAGUUCaCCg -3'
miRNA:   3'- -UCGCCuuCUaCGAgUG---GCUCAAGcGG- -5'
12619 5' -54 NC_003345.1 + 35472 0.69 0.697853
Target:  5'- --gGGAAGAaGCUCGCCGuAGaaccCGCCu -3'
miRNA:   3'- ucgCCUUCUaCGAGUGGC-UCaa--GCGG- -5'
12619 5' -54 NC_003345.1 + 38561 0.69 0.687182
Target:  5'- -aUGGAAGAcggaacccUGCUCuGCCGAGgUCGCg -3'
miRNA:   3'- ucGCCUUCU--------ACGAG-UGGCUCaAGCGg -5'
12619 5' -54 NC_003345.1 + 61643 0.7 0.676459
Target:  5'- aAGCuGGAGAUGgaCACCGAGgaaGCg -3'
miRNA:   3'- -UCGcCUUCUACgaGUGGCUCaagCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.