miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12628 5' -54.6 NC_003345.1 + 46680 0.66 0.862026
Target:  5'- uUCAACUUCGA-GGaGUCGAAccGCCaGCAc -3'
miRNA:   3'- -GGUUGGAGCUaCC-CAGCUU--CGGgUGU- -5'
12628 5' -54.6 NC_003345.1 + 32061 0.66 0.853945
Target:  5'- aCuACCUCGAaGGGUaCGAAGacaCCgACAa -3'
miRNA:   3'- gGuUGGAGCUaCCCA-GCUUCg--GG-UGU- -5'
12628 5' -54.6 NC_003345.1 + 40541 0.66 0.853945
Target:  5'- uUCGGCCUCaacauGGUCGAAGacuaCCACGa -3'
miRNA:   3'- -GGUUGGAGcuac-CCAGCUUCg---GGUGU- -5'
12628 5' -54.6 NC_003345.1 + 71494 0.66 0.845644
Target:  5'- aCCAGuCC-CGGUGucaGUCGGAcGCCCACc -3'
miRNA:   3'- -GGUU-GGaGCUACc--CAGCUU-CGGGUGu -5'
12628 5' -54.6 NC_003345.1 + 32429 0.66 0.837129
Target:  5'- aUCGACCUCGAc-GGUCacGGCCUugGg -3'
miRNA:   3'- -GGUUGGAGCUacCCAGcuUCGGGugU- -5'
12628 5' -54.6 NC_003345.1 + 45979 0.66 0.837129
Target:  5'- cCCAAuCCUCG--GGGUC-AAGCCC-CGu -3'
miRNA:   3'- -GGUU-GGAGCuaCCCAGcUUCGGGuGU- -5'
12628 5' -54.6 NC_003345.1 + 62321 0.68 0.752399
Target:  5'- aCUGACUUCGAUGaGGUCGAugGGUUCGa- -3'
miRNA:   3'- -GGUUGGAGCUAC-CCAGCU--UCGGGUgu -5'
12628 5' -54.6 NC_003345.1 + 36477 0.68 0.74937
Target:  5'- aCAACCUCGAUGcguccguucgucacGGuUCGAccacGGCCCGa- -3'
miRNA:   3'- gGUUGGAGCUAC--------------CC-AGCU----UCGGGUgu -5'
12628 5' -54.6 NC_003345.1 + 14580 0.69 0.711271
Target:  5'- aCGGCgCUCG-UGGGUCGccAGCCgACGu -3'
miRNA:   3'- gGUUG-GAGCuACCCAGCu-UCGGgUGU- -5'
12628 5' -54.6 NC_003345.1 + 12263 0.69 0.711271
Target:  5'- cCCuGCUcCGGUGGGcCGGAGCCgAUg -3'
miRNA:   3'- -GGuUGGaGCUACCCaGCUUCGGgUGu -5'
12628 5' -54.6 NC_003345.1 + 35838 0.69 0.679612
Target:  5'- cCCAcggaaGCCg----GGGUCGAugaAGCCCGCAu -3'
miRNA:   3'- -GGU-----UGGagcuaCCCAGCU---UCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 28852 0.69 0.678548
Target:  5'- aCGACCUCGAUuacgaaaucgccgGGGUCGccGGGuacuaCCCGCAg -3'
miRNA:   3'- gGUUGGAGCUA-------------CCCAGC--UUC-----GGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 4493 0.69 0.658274
Target:  5'- gCCGACCUCGAauUGaaGGUCGGAGauuaccUCCACc -3'
miRNA:   3'- -GGUUGGAGCU--AC--CCAGCUUC------GGGUGu -5'
12628 5' -54.6 NC_003345.1 + 44296 0.7 0.647566
Target:  5'- uCCcGCUgUCG-UGGGauuacuUCGAGGCCCACAa -3'
miRNA:   3'- -GGuUGG-AGCuACCC------AGCUUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 32522 0.7 0.647566
Target:  5'- -uGACCgUCGA--GGUCGAugaAGCCCACGu -3'
miRNA:   3'- ggUUGG-AGCUacCCAGCU---UCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 19862 0.7 0.626118
Target:  5'- aCGACCUCGGUGGGgcCGAugcGGUCUuCAa -3'
miRNA:   3'- gGUUGGAGCUACCCa-GCU---UCGGGuGU- -5'
12628 5' -54.6 NC_003345.1 + 70661 0.7 0.604691
Target:  5'- aCC-ACUUCGucGUGGGUCGGAGCgCC-CGu -3'
miRNA:   3'- -GGuUGGAGC--UACCCAGCUUCG-GGuGU- -5'
12628 5' -54.6 NC_003345.1 + 69722 0.7 0.604691
Target:  5'- aCGGCa-CGAUGGGUCGucggcucgaugAAGCCUACGc -3'
miRNA:   3'- gGUUGgaGCUACCCAGC-----------UUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 38325 0.71 0.594006
Target:  5'- aCCucgacuACCUCGAaGGccgCGAAGCCUACGg -3'
miRNA:   3'- -GGu-----UGGAGCUaCCca-GCUUCGGGUGU- -5'
12628 5' -54.6 NC_003345.1 + 32471 0.71 0.572737
Target:  5'- gCCGACCUCGAUGcGGU--GAGCCacccgaGCGa -3'
miRNA:   3'- -GGUUGGAGCUAC-CCAgcUUCGGg-----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.