miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12641 5' -52.7 NC_003345.1 + 68554 0.67 0.865759
Target:  5'- aCCGACGCCGAuAAcGuaGAACUCGu- -3'
miRNA:   3'- aGGCUGUGGCUcUU-CcgCUUGAGUua -5'
12641 5' -52.7 NC_003345.1 + 64395 0.67 0.873691
Target:  5'- cCCGGC-CCGAacGggGGCGAcaacGCUgAAUc -3'
miRNA:   3'- aGGCUGuGGCU--CuuCCGCU----UGAgUUA- -5'
12641 5' -52.7 NC_003345.1 + 32465 0.66 0.888801
Target:  5'- cCCGACGCCGAccucGAugcGGUGAGC-CAc- -3'
miRNA:   3'- aGGCUGUGGCU----CUu--CCGCUUGaGUua -5'
12641 5' -52.7 NC_003345.1 + 61256 0.66 0.895262
Target:  5'- aUUCGAgGCCGAGAAGguacgcgaaaaccGCGAGCagGAg -3'
miRNA:   3'- -AGGCUgUGGCUCUUC-------------CGCUUGagUUa -5'
12641 5' -52.7 NC_003345.1 + 33915 0.66 0.895967
Target:  5'- cUCCGGCuacCCGuGuaaAAGGCGAacacgGCUCAAc -3'
miRNA:   3'- -AGGCUGu--GGCuC---UUCCGCU-----UGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 70117 0.66 0.895967
Target:  5'- gUCCu-CACCGAG-AGGCGAGacUUCGGa -3'
miRNA:   3'- -AGGcuGUGGCUCuUCCGCUU--GAGUUa -5'
12641 5' -52.7 NC_003345.1 + 72891 0.66 0.902868
Target:  5'- aCUGACccucCCGAcGAGGGCGAGCg---- -3'
miRNA:   3'- aGGCUGu---GGCU-CUUCCGCUUGaguua -5'
12641 5' -52.7 NC_003345.1 + 26544 0.66 0.902868
Target:  5'- cUCaCGACgcGCCGAGAGGucGCGuuCUCAAg -3'
miRNA:   3'- -AG-GCUG--UGGCUCUUC--CGCuuGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 19996 0.66 0.902868
Target:  5'- uUCCGACguacACCGAGAAcGGCccGAACcCGGc -3'
miRNA:   3'- -AGGCUG----UGGCUCUU-CCG--CUUGaGUUa -5'
12641 5' -52.7 NC_003345.1 + 24486 0.66 0.9095
Target:  5'- cCCGgugaGCAUCGAGGAgcuGGUGGACUUGAc -3'
miRNA:   3'- aGGC----UGUGGCUCUU---CCGCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 64850 0.66 0.915859
Target:  5'- gUCCGGuaugagucuCACCGucacGGUGAACUCAAUc -3'
miRNA:   3'- -AGGCU---------GUGGCucuuCCGCUUGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 66354 0.66 0.915859
Target:  5'- cUCCGACGaCGcGAAGGCGuacCUCGc- -3'
miRNA:   3'- -AGGCUGUgGCuCUUCCGCuu-GAGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.