miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12641 5' -52.7 NC_003345.1 + 45452 0.67 0.864953
Target:  5'- --gGugAgCGAGAAGGCGGcgguucaGCUCGGUa -3'
miRNA:   3'- aggCugUgGCUCUUCCGCU-------UGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 64395 0.67 0.873691
Target:  5'- cCCGGC-CCGAacGggGGCGAcaacGCUgAAUc -3'
miRNA:   3'- aGGCUGuGGCU--CuuCCGCU----UGAgUUA- -5'
12641 5' -52.7 NC_003345.1 + 61256 0.66 0.895262
Target:  5'- aUUCGAgGCCGAGAAGguacgcgaaaaccGCGAGCagGAg -3'
miRNA:   3'- -AGGCUgUGGCUCUUC-------------CGCUUGagUUa -5'
12641 5' -52.7 NC_003345.1 + 72891 0.66 0.902868
Target:  5'- aCUGACccucCCGAcGAGGGCGAGCg---- -3'
miRNA:   3'- aGGCUGu---GGCU-CUUCCGCUUGaguua -5'
12641 5' -52.7 NC_003345.1 + 66354 0.66 0.915859
Target:  5'- cUCCGACGaCGcGAAGGCGuacCUCGc- -3'
miRNA:   3'- -AGGCUGUgGCuCUUCCGCuu-GAGUua -5'
12641 5' -52.7 NC_003345.1 + 30687 0.7 0.712063
Target:  5'- gUCCGACucggaACCGAGAGGGaacgcgguCGGGCUUGAc -3'
miRNA:   3'- -AGGCUG-----UGGCUCUUCC--------GCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 20140 0.73 0.527243
Target:  5'- cCCGAUACCaucGGGGAGGuCGAACUCc-- -3'
miRNA:   3'- aGGCUGUGG---CUCUUCC-GCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 38391 0.72 0.59191
Target:  5'- gUUCGAguCCGGGGAGuaGGACUCAAUc -3'
miRNA:   3'- -AGGCUguGGCUCUUCcgCUUGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 51301 0.7 0.698077
Target:  5'- cUCGAC-CCGAGAuacguuaacgagacAGGCG-ACUCGAUg -3'
miRNA:   3'- aGGCUGuGGCUCU--------------UCCGCuUGAGUUA- -5'
12641 5' -52.7 NC_003345.1 + 52500 0.69 0.784466
Target:  5'- gCUGACGCCGAGAcgguucAGGgGAACa---- -3'
miRNA:   3'- aGGCUGUGGCUCU------UCCgCUUGaguua -5'
12641 5' -52.7 NC_003345.1 + 68274 0.68 0.831684
Target:  5'- -aCGACGCUGAGGuggauugguauGGCGAcccgGCUCAGg -3'
miRNA:   3'- agGCUGUGGCUCUu----------CCGCU----UGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 20869 0.74 0.465391
Target:  5'- cCCGACGCCGAGGGaa-GGACUCGAa -3'
miRNA:   3'- aGGCUGUGGCUCUUccgCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 76325 0.68 0.794268
Target:  5'- cUCCGAaaGCCGAGAAGG-GGAUUCc-- -3'
miRNA:   3'- -AGGCUg-UGGCUCUUCCgCUUGAGuua -5'
12641 5' -52.7 NC_003345.1 + 71019 0.72 0.602854
Target:  5'- aCCG-CGCCGAGGAuGGUGAGCUgGu- -3'
miRNA:   3'- aGGCuGUGGCUCUU-CCGCUUGAgUua -5'
12641 5' -52.7 NC_003345.1 + 58731 0.78 0.277133
Target:  5'- -aCGACACCGAGAAcgauauuguGGCGAGCUUAu- -3'
miRNA:   3'- agGCUGUGGCUCUU---------CCGCUUGAGUua -5'
12641 5' -52.7 NC_003345.1 + 52740 0.67 0.865759
Target:  5'- cCCGAC-CgGAGAGGGCGGgaaaaaggaggACUUAu- -3'
miRNA:   3'- aGGCUGuGgCUCUUCCGCU-----------UGAGUua -5'
12641 5' -52.7 NC_003345.1 + 24486 0.66 0.9095
Target:  5'- cCCGgugaGCAUCGAGGAgcuGGUGGACUUGAc -3'
miRNA:   3'- aGGC----UGUGGCUCUU---CCGCUUGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 26544 0.66 0.902868
Target:  5'- cUCaCGACgcGCCGAGAGGucGCGuuCUCAAg -3'
miRNA:   3'- -AG-GCUG--UGGCUCUUC--CGCuuGAGUUa -5'
12641 5' -52.7 NC_003345.1 + 19996 0.66 0.902868
Target:  5'- uUCCGACguacACCGAGAAcGGCccGAACcCGGc -3'
miRNA:   3'- -AGGCUG----UGGCUCUU-CCG--CUUGaGUUa -5'
12641 5' -52.7 NC_003345.1 + 33915 0.66 0.895967
Target:  5'- cUCCGGCuacCCGuGuaaAAGGCGAacacgGCUCAAc -3'
miRNA:   3'- -AGGCUGu--GGCuC---UUCCGCU-----UGAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.