miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12678 3' -52.4 NC_003345.1 + 71145 1.12 0.001978
Target:  5'- gUAGCGAGAGUCGCAGUCGUAAUCGCCg -3'
miRNA:   3'- -AUCGCUCUCAGCGUCAGCAUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 34410 0.66 0.928636
Target:  5'- gAGgGAcAGUCGCAGacCGgacUCGCCg -3'
miRNA:   3'- aUCgCUcUCAGCGUCa-GCauuAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 2138 0.66 0.903939
Target:  5'- cGGCGAGAGugacaUCGCuaAGUgGUGcgaagCGCCc -3'
miRNA:   3'- aUCGCUCUC-----AGCG--UCAgCAUua---GCGG- -5'
12678 3' -52.4 NC_003345.1 + 63117 0.67 0.882587
Target:  5'- cAGcCGAGuAGUCgGCAGUagCGUAguccaccgaGUCGCCc -3'
miRNA:   3'- aUC-GCUC-UCAG-CGUCA--GCAU---------UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 57218 0.67 0.871826
Target:  5'- -uGCGGGccUCGUAGguuuccucguccaCGUAAUCGCCa -3'
miRNA:   3'- auCGCUCucAGCGUCa------------GCAUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 62803 0.68 0.825051
Target:  5'- cGGaCGAGAGgcgcuuguugauuggCGUGGUCGUGAuaccgagcuUCGCCc -3'
miRNA:   3'- aUC-GCUCUCa--------------GCGUCAGCAUU---------AGCGG- -5'
12678 3' -52.4 NC_003345.1 + 45389 0.68 0.824139
Target:  5'- aUAGUucGAGAagGUCGUcGUCGcGGUCGCCc -3'
miRNA:   3'- -AUCG--CUCU--CAGCGuCAGCaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 54572 0.69 0.805498
Target:  5'- -uGUGGGGGUCGCuGUCGUGcggagaaaccucGaUGCCg -3'
miRNA:   3'- auCGCUCUCAGCGuCAGCAU------------UaGCGG- -5'
12678 3' -52.4 NC_003345.1 + 12403 0.69 0.805498
Target:  5'- gAGUGGGAGUCGCuGaCGgagGAcaaCGCCa -3'
miRNA:   3'- aUCGCUCUCAGCGuCaGCa--UUa--GCGG- -5'
12678 3' -52.4 NC_003345.1 + 63354 0.69 0.766133
Target:  5'- aGGCGAGAGUgGagaGGUCu---UCGCCc -3'
miRNA:   3'- aUCGCUCUCAgCg--UCAGcauuAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 45934 0.7 0.745582
Target:  5'- gAGCGAuAGUCGUgauGUUGUGGUUGCg -3'
miRNA:   3'- aUCGCUcUCAGCGu--CAGCAUUAGCGg -5'
12678 3' -52.4 NC_003345.1 + 41676 0.7 0.703199
Target:  5'- aAGCGGGAGggcCGUAGUag-AAUCGUCg -3'
miRNA:   3'- aUCGCUCUCa--GCGUCAgcaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 49487 0.71 0.692403
Target:  5'- gGGCcgucgauAGAGUCGuCAGUCG-AGUCGUCa -3'
miRNA:   3'- aUCGc------UCUCAGC-GUCAGCaUUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 11006 0.66 0.897086
Target:  5'- -cGUGAGAGcCGCuauGUCGgcguucAUCGCUc -3'
miRNA:   3'- auCGCUCUCaGCGu--CAGCau----UAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 32769 0.66 0.903939
Target:  5'- -uGCGAGAGa-GCGGUCGgcGUUGaCa -3'
miRNA:   3'- auCGCUCUCagCGUCAGCauUAGCgG- -5'
12678 3' -52.4 NC_003345.1 + 50324 0.66 0.903939
Target:  5'- --uCGGGGGUCGCGGUgGUAAUgGa- -3'
miRNA:   3'- aucGCUCUCAGCGUCAgCAUUAgCgg -5'
12678 3' -52.4 NC_003345.1 + 21767 0.66 0.922873
Target:  5'- -cGUcGGAGUCaCcGUCGUcGUCGCCg -3'
miRNA:   3'- auCGcUCUCAGcGuCAGCAuUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 10911 0.66 0.928636
Target:  5'- cGGgGAGGGa-GCAGUCcuuacaGUuGUCGCCg -3'
miRNA:   3'- aUCgCUCUCagCGUCAG------CAuUAGCGG- -5'
12678 3' -52.4 NC_003345.1 + 14636 0.66 0.928636
Target:  5'- aUAGUcGGGGUCGCAcGgccuccacUCGUGGUCGUg -3'
miRNA:   3'- -AUCGcUCUCAGCGU-C--------AGCAUUAGCGg -5'
12678 3' -52.4 NC_003345.1 + 20466 0.73 0.550543
Target:  5'- gGGUucGAGAGUCGCu-UCGaGGUCGCCg -3'
miRNA:   3'- aUCG--CUCUCAGCGucAGCaUUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.