Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12678 | 3' | -52.4 | NC_003345.1 | + | 71145 | 1.12 | 0.001978 |
Target: 5'- gUAGCGAGAGUCGCAGUCGUAAUCGCCg -3' miRNA: 3'- -AUCGCUCUCAGCGUCAGCAUUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 46890 | 0.73 | 0.550543 |
Target: 5'- cGGCGAGGG-CGCGGUCGUGgaggagaaccuGUgGCg -3' miRNA: 3'- aUCGCUCUCaGCGUCAGCAU-----------UAgCGg -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 20466 | 0.73 | 0.550543 |
Target: 5'- gGGUucGAGAGUCGCu-UCGaGGUCGCCg -3' miRNA: 3'- aUCG--CUCUCAGCGucAGCaUUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 19940 | 0.73 | 0.550543 |
Target: 5'- -cGUGGuAGUCGCGGUCGUcGUCGUUa -3' miRNA: 3'- auCGCUcUCAGCGUCAGCAuUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 39325 | 0.71 | 0.648747 |
Target: 5'- cGGUGAGAGaaucccgaauuUCGuUAGUCGUGuaccacccGUCGCCg -3' miRNA: 3'- aUCGCUCUC-----------AGC-GUCAGCAU--------UAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 47301 | 0.71 | 0.670647 |
Target: 5'- gAGCGGGGGUgGC-GUCGgguaCGCCu -3' miRNA: 3'- aUCGCUCUCAgCGuCAGCauuaGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 49487 | 0.71 | 0.692403 |
Target: 5'- gGGCcgucgauAGAGUCGuCAGUCG-AGUCGUCa -3' miRNA: 3'- aUCGc------UCUCAGC-GUCAGCaUUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 15328 | 0.7 | 0.703199 |
Target: 5'- uUGGUGAG-GUCGgGGccgaCGUGGUUGCCg -3' miRNA: 3'- -AUCGCUCuCAGCgUCa---GCAUUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 41676 | 0.7 | 0.703199 |
Target: 5'- aAGCGGGAGggcCGUAGUag-AAUCGUCg -3' miRNA: 3'- aUCGCUCUCa--GCGUCAgcaUUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 10260 | 0.7 | 0.745582 |
Target: 5'- ---aGGGAGUagaaGUAGUCGUAGUCGgCu -3' miRNA: 3'- aucgCUCUCAg---CGUCAGCAUUAGCgG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 45934 | 0.7 | 0.745582 |
Target: 5'- gAGCGAuAGUCGUgauGUUGUGGUUGCg -3' miRNA: 3'- aUCGCUcUCAGCGu--CAGCAUUAGCGg -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 63354 | 0.69 | 0.766133 |
Target: 5'- aGGCGAGAGUgGagaGGUCu---UCGCCc -3' miRNA: 3'- aUCGCUCUCAgCg--UCAGcauuAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 34397 | 0.69 | 0.795902 |
Target: 5'- cGGUGAGcuGGUCGCugaGGUCGUccAGUUGCg -3' miRNA: 3'- aUCGCUC--UCAGCG---UCAGCA--UUAGCGg -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 12403 | 0.69 | 0.805498 |
Target: 5'- gAGUGGGAGUCGCuGaCGgagGAcaaCGCCa -3' miRNA: 3'- aUCGCUCUCAGCGuCaGCa--UUa--GCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 54572 | 0.69 | 0.805498 |
Target: 5'- -uGUGGGGGUCGCuGUCGUGcggagaaaccucGaUGCCg -3' miRNA: 3'- auCGCUCUCAGCGuCAGCAU------------UaGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 45389 | 0.68 | 0.824139 |
Target: 5'- aUAGUucGAGAagGUCGUcGUCGcGGUCGCCc -3' miRNA: 3'- -AUCG--CUCU--CAGCGuCAGCaUUAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 62803 | 0.68 | 0.825051 |
Target: 5'- cGGaCGAGAGgcgcuuguugauuggCGUGGUCGUGAuaccgagcuUCGCCc -3' miRNA: 3'- aUC-GCUCUCa--------------GCGUCAGCAUU---------AGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 42955 | 0.68 | 0.833163 |
Target: 5'- aUAGUGA-AGUCGCGGUUGUccucuuUCGCa -3' miRNA: 3'- -AUCGCUcUCAGCGUCAGCAuu----AGCGg -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 12588 | 0.67 | 0.858935 |
Target: 5'- cGGCucGGGAGUaCGCu-UCGUAgagGUCGCCg -3' miRNA: 3'- aUCG--CUCUCA-GCGucAGCAU---UAGCGG- -5' |
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12678 | 3' | -52.4 | NC_003345.1 | + | 57218 | 0.67 | 0.871826 |
Target: 5'- -uGCGGGccUCGUAGguuuccucguccaCGUAAUCGCCa -3' miRNA: 3'- auCGCUCucAGCGUCa------------GCAUUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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