Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12682 | 3' | -45.8 | NC_003345.1 | + | 75341 | 0.67 | 0.998855 |
Target: 5'- gGGAAcCGCaCAUUg-GUCGGUcAAGACCu -3' miRNA: 3'- -UCUU-GCG-GUAGagCAGUUAuUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 75217 | 0.66 | 0.999533 |
Target: 5'- gAGGACgGUCAgCUCGUCcgagaGGAGACUg -3' miRNA: 3'- -UCUUG-CGGUaGAGCAGuua--UUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 74157 | 0.69 | 0.992993 |
Target: 5'- cGGACuCCG-CUCGU-GGUGAAGACCc -3' miRNA: 3'- uCUUGcGGUaGAGCAgUUAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 74020 | 1.15 | 0.006531 |
Target: 5'- aAGAACGCCAUCUCGUCAAUAAAGACCg -3' miRNA: 3'- -UCUUGCGGUAGAGCAGUUAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 72303 | 0.67 | 0.997906 |
Target: 5'- --uGCGUCGUCgUCGUCG----GGGCCa -3' miRNA: 3'- ucuUGCGGUAG-AGCAGUuauuUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 71371 | 0.66 | 0.999533 |
Target: 5'- cGAGCGU--UCUCGaaacaaccgcgcUCAGgugGAAGACCu -3' miRNA: 3'- uCUUGCGguAGAGC------------AGUUa--UUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 71268 | 0.67 | 0.99883 |
Target: 5'- uGAGCGCgGUuguuucgagaacgCUCGUCGGUucGGGCg -3' miRNA: 3'- uCUUGCGgUA-------------GAGCAGUUAuuUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 70528 | 0.7 | 0.983687 |
Target: 5'- uGAACGCCGcUgUCGaUGAUGAGGACg -3' miRNA: 3'- uCUUGCGGU-AgAGCaGUUAUUUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 67396 | 0.71 | 0.97359 |
Target: 5'- aAGuACGCCugauUCUCGUUAAUAAucuGGAgCg -3' miRNA: 3'- -UCuUGCGGu---AGAGCAGUUAUU---UCUgG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 66577 | 0.66 | 0.999259 |
Target: 5'- -cGACGCCGUaucCUCGUCAAgcccGuCCg -3' miRNA: 3'- ucUUGCGGUA---GAGCAGUUauuuCuGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 63273 | 0.68 | 0.99637 |
Target: 5'- cGAGCGUagcCcCGUCGaugGUAAAGACCa -3' miRNA: 3'- uCUUGCGguaGaGCAGU---UAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 61380 | 0.72 | 0.955413 |
Target: 5'- cGAGaaCCAUCUCGUCuuc-AAGACCc -3' miRNA: 3'- uCUUgcGGUAGAGCAGuuauUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 60491 | 0.67 | 0.998855 |
Target: 5'- gAGAAgGCCGUCaccaagCGUCuccgAAAGAgCa -3' miRNA: 3'- -UCUUgCGGUAGa-----GCAGuua-UUUCUgG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 55490 | 0.76 | 0.811568 |
Target: 5'- cGGAugGCUccgGUCUaaaCGUCGGUGAAGACg -3' miRNA: 3'- -UCUugCGG---UAGA---GCAGUUAUUUCUGg -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 54674 | 0.74 | 0.91803 |
Target: 5'- uGAugGUCGUCUCGUCAAauuc-ACCg -3' miRNA: 3'- uCUugCGGUAGAGCAGUUauuucUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 53035 | 0.67 | 0.997906 |
Target: 5'- cGAugGCGaCCAUcCUCGggugCGAgguUGAAGACCu -3' miRNA: 3'- uCU--UGC-GGUA-GAGCa---GUU---AUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 51246 | 0.69 | 0.992993 |
Target: 5'- uGAACGCgagCGUCcaaGUCGGUGAcGACCu -3' miRNA: 3'- uCUUGCG---GUAGag-CAGUUAUUuCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 48978 | 0.66 | 0.999533 |
Target: 5'- aGGAACGUUcUCUCGUCuaAAUAAucucGugCg -3' miRNA: 3'- -UCUUGCGGuAGAGCAG--UUAUUu---CugG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 45627 | 0.74 | 0.897553 |
Target: 5'- cGGAUGCCuaccagCUUGcccUCGAUGAAGGCCg -3' miRNA: 3'- uCUUGCGGua----GAGC---AGUUAUUUCUGG- -5' |
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12682 | 3' | -45.8 | NC_003345.1 | + | 45036 | 0.67 | 0.998855 |
Target: 5'- uGGAACaGCuCAUCgagUCGUUugaaGAAGACCg -3' miRNA: 3'- -UCUUG-CG-GUAG---AGCAGuua-UUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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