miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12683 3' -61.8 NC_003345.1 + 63461 0.66 0.532422
Target:  5'- gGGCUGu-CCucaCCGAaccaCUCGCGGgCCUu -3'
miRNA:   3'- -CCGACuuGGc--GGCUg---GAGCGCCgGGG- -5'
12683 3' -61.8 NC_003345.1 + 14235 0.66 0.521646
Target:  5'- aGGCaGAACCGCCucuuGACUUCGauGaagugcuggaaaaCCCCg -3'
miRNA:   3'- -CCGaCUUGGCGG----CUGGAGCgcC-------------GGGG- -5'
12683 3' -61.8 NC_003345.1 + 42308 0.66 0.503239
Target:  5'- uGgUGGACUGaCGGCUUCGCGGagcaaaugaCCCg -3'
miRNA:   3'- cCgACUUGGCgGCUGGAGCGCCg--------GGG- -5'
12683 3' -61.8 NC_003345.1 + 32446 0.66 0.493665
Target:  5'- cGGCcuugggGAACgcuuccccgaCGCCGACCUCgauGCGGUgagccaCCCg -3'
miRNA:   3'- -CCGa-----CUUG----------GCGGCUGGAG---CGCCG------GGG- -5'
12683 3' -61.8 NC_003345.1 + 19861 0.66 0.484175
Target:  5'- aGCaGAuaACCGCCG-CUggCGCGGCUCa -3'
miRNA:   3'- cCGaCU--UGGCGGCuGGa-GCGCCGGGg -5'
12683 3' -61.8 NC_003345.1 + 46128 0.66 0.474774
Target:  5'- cGCaUGAcgcACCGCgCGACCUCGUagGaGUCCUg -3'
miRNA:   3'- cCG-ACU---UGGCG-GCUGGAGCG--C-CGGGG- -5'
12683 3' -61.8 NC_003345.1 + 57938 0.66 0.474774
Target:  5'- aGGCUacugGAAUCGaCC-ACUUgGCGGCuCCCg -3'
miRNA:   3'- -CCGA----CUUGGC-GGcUGGAgCGCCG-GGG- -5'
12683 3' -61.8 NC_003345.1 + 24389 0.67 0.456251
Target:  5'- gGGUUGAcguugACuCGuCCGACCUCGCucGUCUCg -3'
miRNA:   3'- -CCGACU-----UG-GC-GGCUGGAGCGc-CGGGG- -5'
12683 3' -61.8 NC_003345.1 + 75640 0.67 0.429217
Target:  5'- aGCUGuuCCGUCG-CgCUCGCGGUCUUc -3'
miRNA:   3'- cCGACuuGGCGGCuG-GAGCGCCGGGG- -5'
12683 3' -61.8 NC_003345.1 + 42515 0.67 0.426565
Target:  5'- cGGCUGAAucggucgcgggUCGCCggacugauuuuuguGACCUCGCccGUCCCc -3'
miRNA:   3'- -CCGACUU-----------GGCGG--------------CUGGAGCGc-CGGGG- -5'
12683 3' -61.8 NC_003345.1 + 33713 0.68 0.411727
Target:  5'- aGCUGAACaacgagguguaCGuuGACCUCGCcGCCg- -3'
miRNA:   3'- cCGACUUG-----------GCggCUGGAGCGcCGGgg -5'
12683 3' -61.8 NC_003345.1 + 70173 0.68 0.394685
Target:  5'- -cCUGAACCuCCGAga-CGCGGCCCUc -3'
miRNA:   3'- ccGACUUGGcGGCUggaGCGCCGGGG- -5'
12683 3' -61.8 NC_003345.1 + 51869 0.68 0.386337
Target:  5'- aGGUUG-ACC-CCGACUUCGgGGCUggaaCCg -3'
miRNA:   3'- -CCGACuUGGcGGCUGGAGCgCCGG----GG- -5'
12683 3' -61.8 NC_003345.1 + 24132 0.69 0.354131
Target:  5'- uGUUGuccCCGUCGuCCgUGUGGCCCCg -3'
miRNA:   3'- cCGACuu-GGCGGCuGGaGCGCCGGGG- -5'
12683 3' -61.8 NC_003345.1 + 21483 0.69 0.349467
Target:  5'- uGGCUGAACgaggaCGCucucgaacuccgugaCGACCUCGaaGGCCgCCg -3'
miRNA:   3'- -CCGACUUG-----GCG---------------GCUGGAGCg-CCGG-GG- -5'
12683 3' -61.8 NC_003345.1 + 48750 0.7 0.295572
Target:  5'- uGCUG-ACUGaCgCGACCUCcCGGCCCa -3'
miRNA:   3'- cCGACuUGGC-G-GCUGGAGcGCCGGGg -5'
12683 3' -61.8 NC_003345.1 + 61248 0.7 0.282162
Target:  5'- -cUUGAgGCCGaaGAUuacgCUCGCGGCCCCa -3'
miRNA:   3'- ccGACU-UGGCggCUG----GAGCGCCGGGG- -5'
12683 3' -61.8 NC_003345.1 + 52333 0.7 0.282162
Target:  5'- gGGCUacgacGAGaCGCaCGACUUCaGCGGCUCCg -3'
miRNA:   3'- -CCGA-----CUUgGCG-GCUGGAG-CGCCGGGG- -5'
12683 3' -61.8 NC_003345.1 + 72139 0.71 0.269238
Target:  5'- -aUUGAGCCGgauUCGAUgCUCGCGGCUCCc -3'
miRNA:   3'- ccGACUUGGC---GGCUG-GAGCGCCGGGG- -5'
12683 3' -61.8 NC_003345.1 + 72319 0.71 0.250753
Target:  5'- gGGCc--ACCGCCGcCCg-GCGGCUCCa -3'
miRNA:   3'- -CCGacuUGGCGGCuGGagCGCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.