Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12702 | 3' | -50.4 | NC_003349.1 | + | 76258 | 0.66 | 0.994749 |
Target: 5'- cGUAACCGucccuaggauuACGUuuaUACaUGAGAAUGUGCg -3' miRNA: 3'- uCGUUGGC-----------UGCG---AUG-GCUUUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 58887 | 0.66 | 0.993897 |
Target: 5'- cGGCGugacacccGCCGAuguuguCGUUGCCGGu--UGUGCg -3' miRNA: 3'- -UCGU--------UGGCU------GCGAUGGCUuuuGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 51544 | 0.66 | 0.990532 |
Target: 5'- uGGCAACgGACGCU-CCGGugggaaucgccauGGGuaugaacgcCGUGCa -3' miRNA: 3'- -UCGUUGgCUGCGAuGGCU-------------UUU---------GCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 94111 | 0.67 | 0.989322 |
Target: 5'- -uCGACCGuuuaGCGUgACCGAuuguGAAUGUGCu -3' miRNA: 3'- ucGUUGGC----UGCGaUGGCU----UUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 113677 | 0.67 | 0.987839 |
Target: 5'- cGCAGCCGuacuUGUcACCGAcGACGccGCa -3' miRNA: 3'- uCGUUGGCu---GCGaUGGCUuUUGCa-CG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 57541 | 0.67 | 0.984402 |
Target: 5'- cAGUAgaACCGGCugacgaaacuGCUGCUGuugagaguAAACGUGCu -3' miRNA: 3'- -UCGU--UGGCUG----------CGAUGGCu-------UUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 43084 | 0.67 | 0.982429 |
Target: 5'- uGGCAuCUGcgcGCGCUACCc--AACGUGUa -3' miRNA: 3'- -UCGUuGGC---UGCGAUGGcuuUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 51486 | 0.67 | 0.982012 |
Target: 5'- cGCGACUGGaucaauucggaccUGCUGCCGAAgcuuugcGACGaugGCa -3' miRNA: 3'- uCGUUGGCU-------------GCGAUGGCUU-------UUGCa--CG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 51608 | 0.68 | 0.97768 |
Target: 5'- cGGC-GCCGACGC-ACCGugGAUGaaggacuUGCa -3' miRNA: 3'- -UCGuUGGCUGCGaUGGCuuUUGC-------ACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 99115 | 0.68 | 0.975379 |
Target: 5'- gAGguGCuCGACGaaACUGAAuuACGUGCc -3' miRNA: 3'- -UCguUG-GCUGCgaUGGCUUu-UGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 59391 | 0.68 | 0.975379 |
Target: 5'- uGCAaaaGCUugGACGCUACUGAAGAUauuuUGCa -3' miRNA: 3'- uCGU---UGG--CUGCGAUGGCUUUUGc---ACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 113637 | 0.68 | 0.971462 |
Target: 5'- uAGCAACagucgcggacgcaGACGCaGCCGAAGcCGUaGCc -3' miRNA: 3'- -UCGUUGg------------CUGCGaUGGCUUUuGCA-CG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 128736 | 0.69 | 0.963034 |
Target: 5'- gAGUGAUgGACGCggacgaUGCCGAAGAauUGCa -3' miRNA: 3'- -UCGUUGgCUGCG------AUGGCUUUUgcACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 99931 | 0.69 | 0.962678 |
Target: 5'- uGGCAACCGAauaCGCUuuucaucACCGAAGcCG-GUa -3' miRNA: 3'- -UCGUUGGCU---GCGA-------UGGCUUUuGCaCG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 103626 | 0.69 | 0.95547 |
Target: 5'- uGCAauauGCCGAgcCGCUACCGAuucacgaaGUGUa -3' miRNA: 3'- uCGU----UGGCU--GCGAUGGCUuuug----CACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 20809 | 0.69 | 0.95547 |
Target: 5'- uGCAAaugauucuucaUGAUGUUGCCGAauaucuuguuguGAACGUGCa -3' miRNA: 3'- uCGUUg----------GCUGCGAUGGCU------------UUUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 83797 | 0.7 | 0.942263 |
Target: 5'- cGUAGCCaaacgauuguugGACGUUAUCGAAAACG-GUa -3' miRNA: 3'- uCGUUGG------------CUGCGAUGGCUUUUGCaCG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 16600 | 0.7 | 0.937351 |
Target: 5'- cGGCGguGCgCGACGgUGCCGAAAAUGa-- -3' miRNA: 3'- -UCGU--UG-GCUGCgAUGGCUUUUGCacg -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 40384 | 0.7 | 0.934797 |
Target: 5'- cAGCGAaauuccguaaaaCGACacaaauauuugaauGCUACCGAuauGGCGUGCa -3' miRNA: 3'- -UCGUUg-----------GCUG--------------CGAUGGCUu--UUGCACG- -5' |
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12702 | 3' | -50.4 | NC_003349.1 | + | 128862 | 0.7 | 0.932178 |
Target: 5'- uAGUAcaaAUCGAUGCUaACCGAAAAUG-GCc -3' miRNA: 3'- -UCGU---UGGCUGCGA-UGGCUUUUGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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