Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12771 | 5' | -50 | NC_003387.1 | + | 10851 | 0.68 | 0.868659 |
Target: 5'- gGCuGCAGGCcgUgcccgcucaucacGACCGCCGUcGGCCGc -3' miRNA: 3'- -CGcUGUCUGa-A-------------UUGGCGGUAuUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 26601 | 0.68 | 0.861044 |
Target: 5'- gGCGACGGACgc-GCCGaCCu--GGCgCAg -3' miRNA: 3'- -CGCUGUCUGaauUGGC-GGuauUCG-GU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 7178 | 0.68 | 0.861044 |
Target: 5'- gGCGGCGGAUcgccuuGCCGCac--GGCCAg -3' miRNA: 3'- -CGCUGUCUGaau---UGGCGguauUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 7539 | 0.68 | 0.852334 |
Target: 5'- aGCGGCAcuGCU--GCCGCCcu-GGCCGa -3' miRNA: 3'- -CGCUGUc-UGAauUGGCGGuauUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 20785 | 0.68 | 0.852334 |
Target: 5'- uGCGACcGGCgcgGAuCUGCUcgGUGAGCCAc -3' miRNA: 3'- -CGCUGuCUGaa-UU-GGCGG--UAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 2338 | 0.68 | 0.852334 |
Target: 5'- uCGGCGGugUcgaGGCCGCCGUcGGCg- -3' miRNA: 3'- cGCUGUCugAa--UUGGCGGUAuUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 42221 | 0.68 | 0.843372 |
Target: 5'- gGCGACcGGCgc-ACCGCgAUGGGCgAg -3' miRNA: 3'- -CGCUGuCUGaauUGGCGgUAUUCGgU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 37202 | 0.69 | 0.824731 |
Target: 5'- cGCGugcaGCAGGCggUGcucauaaacGCCGCCGUGGGCg- -3' miRNA: 3'- -CGC----UGUCUGa-AU---------UGGCGGUAUUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 40350 | 0.69 | 0.815074 |
Target: 5'- aGCGGCAGAUUgcgGGCCGUCGc-GGCg- -3' miRNA: 3'- -CGCUGUCUGAa--UUGGCGGUauUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 27250 | 0.69 | 0.805205 |
Target: 5'- cCGACAGGaugcGCCGC-AUGAGCCGc -3' miRNA: 3'- cGCUGUCUgaauUGGCGgUAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 12582 | 0.69 | 0.795139 |
Target: 5'- cCGACGGugU----CGCCGUGGGCCu -3' miRNA: 3'- cGCUGUCugAauugGCGGUAUUCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 36843 | 0.69 | 0.795139 |
Target: 5'- gGCGGCGGcGCUgUGACCGCCcucAAGCa- -3' miRNA: 3'- -CGCUGUC-UGA-AUUGGCGGua-UUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 2556 | 0.7 | 0.77446 |
Target: 5'- cGCGGCAGAUcc--UCGCCGUGuacGCCGa -3' miRNA: 3'- -CGCUGUCUGaauuGGCGGUAUu--CGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 39315 | 0.7 | 0.77446 |
Target: 5'- gGCGAgCGccGACUUAACCGUC---GGCCAc -3' miRNA: 3'- -CGCU-GU--CUGAAUUGGCGGuauUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 48258 | 0.7 | 0.763873 |
Target: 5'- cGCGGCGGGCUcGGCgGUCGgcucGGCCu -3' miRNA: 3'- -CGCUGUCUGAaUUGgCGGUau--UCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 35491 | 0.7 | 0.753138 |
Target: 5'- aGUGACAGcaaGCg--GCCGUgGUGGGCCGa -3' miRNA: 3'- -CGCUGUC---UGaauUGGCGgUAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 41596 | 0.7 | 0.753138 |
Target: 5'- cGCGGCGGucaGCUUGucgaACaCGcCCAUAAGCCc -3' miRNA: 3'- -CGCUGUC---UGAAU----UG-GC-GGUAUUCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 39001 | 0.7 | 0.750975 |
Target: 5'- uGCG-CAGGCUgaucgcccugcGCCGCC-UGGGCCGc -3' miRNA: 3'- -CGCuGUCUGAau---------UGGCGGuAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 26766 | 0.71 | 0.731276 |
Target: 5'- aGCGAUcGGCcUGGCCGCCGaAGGCa- -3' miRNA: 3'- -CGCUGuCUGaAUUGGCGGUaUUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 50841 | 0.71 | 0.708982 |
Target: 5'- aGCG-CGGGC-UGAUCGCCAUGcGUCAa -3' miRNA: 3'- -CGCuGUCUGaAUUGGCGGUAUuCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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