Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12771 | 5' | -50 | NC_003387.1 | + | 26766 | 0.71 | 0.731276 |
Target: 5'- aGCGAUcGGCcUGGCCGCCGaAGGCa- -3' miRNA: 3'- -CGCUGuCUGaAUUGGCGGUaUUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 27215 | 0.66 | 0.920729 |
Target: 5'- gGCGAUcagcuuGGACUUGaACCGCUGcAGGUCGc -3' miRNA: 3'- -CGCUG------UCUGAAU-UGGCGGUaUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 27250 | 0.69 | 0.805205 |
Target: 5'- cCGACAGGaugcGCCGC-AUGAGCCGc -3' miRNA: 3'- cGCUGUCUgaauUGGCGgUAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 28223 | 0.76 | 0.411614 |
Target: 5'- uGCGGCuGACg-AACCGCCGgucGGCCAg -3' miRNA: 3'- -CGCUGuCUGaaUUGGCGGUau-UCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 28888 | 0.68 | 0.87767 |
Target: 5'- uGCGGCGG-CUUAGgCGCgGgcgccGGGCCAc -3' miRNA: 3'- -CGCUGUCuGAAUUgGCGgUa----UUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 30098 | 0.68 | 0.87767 |
Target: 5'- uCGGCGGGCggccagGGCCGCCAagugaccuUGGGCgAg -3' miRNA: 3'- cGCUGUCUGaa----UUGGCGGU--------AUUCGgU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 30217 | 0.72 | 0.662357 |
Target: 5'- cGCGGCGGGCaUGAUccauucgCGCCAguuGGCCGg -3' miRNA: 3'- -CGCUGUCUGaAUUG-------GCGGUau-UCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 31260 | 0.67 | 0.885572 |
Target: 5'- gGCG-CGGGCUg---CGCCAgcgGGGCCGg -3' miRNA: 3'- -CGCuGUCUGAauugGCGGUa--UUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 32238 | 0.74 | 0.549123 |
Target: 5'- cGCGACGaGCUggccGACCGCCu--GGCCGu -3' miRNA: 3'- -CGCUGUcUGAa---UUGGCGGuauUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 33377 | 0.66 | 0.926865 |
Target: 5'- cGCgGGCGGAUgggacGCCGCCGcAGGCaCAu -3' miRNA: 3'- -CG-CUGUCUGaau--UGGCGGUaUUCG-GU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 34850 | 0.72 | 0.674952 |
Target: 5'- uUGAgGGGCU--GCUGCCGUGAGCgCAa -3' miRNA: 3'- cGCUgUCUGAauUGGCGGUAUUCG-GU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 35358 | 0.68 | 0.87767 |
Target: 5'- -aGACAGGCUcgccgcaccUGAUCGCCGUc-GCCu -3' miRNA: 3'- cgCUGUCUGA---------AUUGGCGGUAuuCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 35491 | 0.7 | 0.753138 |
Target: 5'- aGUGACAGcaaGCg--GCCGUgGUGGGCCGa -3' miRNA: 3'- -CGCUGUC---UGaauUGGCGgUAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 36843 | 0.69 | 0.795139 |
Target: 5'- gGCGGCGGcGCUgUGACCGCCcucAAGCa- -3' miRNA: 3'- -CGCUGUC-UGA-AUUGGCGGua-UUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 37202 | 0.69 | 0.824731 |
Target: 5'- cGCGugcaGCAGGCggUGcucauaaacGCCGCCGUGGGCg- -3' miRNA: 3'- -CGC----UGUCUGa-AU---------UGGCGGUAUUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 37461 | 0.66 | 0.926865 |
Target: 5'- uGCuGGCGGcGCUgcGCCGCCAaaagguGCCGg -3' miRNA: 3'- -CG-CUGUC-UGAauUGGCGGUauu---CGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 39001 | 0.7 | 0.750975 |
Target: 5'- uGCG-CAGGCUgaucgcccugcGCCGCC-UGGGCCGc -3' miRNA: 3'- -CGCuGUCUGAau---------UGGCGGuAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 39315 | 0.7 | 0.77446 |
Target: 5'- gGCGAgCGccGACUUAACCGUC---GGCCAc -3' miRNA: 3'- -CGCU-GU--CUGAAUUGGCGGuauUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 40350 | 0.69 | 0.815074 |
Target: 5'- aGCGGCAGAUUgcgGGCCGUCGc-GGCg- -3' miRNA: 3'- -CGCUGUCUGAa--UUGGCGGUauUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 40353 | 0.66 | 0.932698 |
Target: 5'- uGCaGCAGGCcgUGAUCGCgGccgGGGCCAa -3' miRNA: 3'- -CGcUGUCUGa-AUUGGCGgUa--UUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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