miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 12582 0.69 0.795139
Target:  5'- cCGACGGugU----CGCCGUGGGCCu -3'
miRNA:   3'- cGCUGUCugAauugGCGGUAUUCGGu -5'
12771 5' -50 NC_003387.1 + 15449 0.77 0.373736
Target:  5'- cGCGcCAGGCgccuUGACCGCCAcgcGGGCCGa -3'
miRNA:   3'- -CGCuGUCUGa---AUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 17017 0.74 0.537924
Target:  5'- aGCGGCAGGCcgUcgUCGCCGUAcGGCCc -3'
miRNA:   3'- -CGCUGUCUGa-AuuGGCGGUAU-UCGGu -5'
12771 5' -50 NC_003387.1 + 17030 0.67 0.89319
Target:  5'- cGCGGCGG-CU--GCCGCCcuc-GCCGg -3'
miRNA:   3'- -CGCUGUCuGAauUGGCGGuauuCGGU- -5'
12771 5' -50 NC_003387.1 + 17571 0.66 0.941923
Target:  5'- gGCGACAacgccccgcuggucGACcugcagUGGCCGCCGcuUGAGCa- -3'
miRNA:   3'- -CGCUGU--------------CUGa-----AUUGGCGGU--AUUCGgu -5'
12771 5' -50 NC_003387.1 + 17734 0.71 0.686356
Target:  5'- cCGGCccGGCcgGGCCGCCAgGGGCCAc -3'
miRNA:   3'- cGCUGu-CUGaaUUGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 18231 0.66 0.920729
Target:  5'- aGCGGCGGGCgu-ACU--CGUAGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaauUGGcgGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 18310 0.66 0.940358
Target:  5'- cGCGGCGGuggcgcccggcaacgGCgUGGCCGUCGUGcccGCCGg -3'
miRNA:   3'- -CGCUGUC---------------UGaAUUGGCGGUAUu--CGGU- -5'
12771 5' -50 NC_003387.1 + 18609 0.71 0.6818
Target:  5'- cGCGACGucGACgccgccgaucuGCCGCCGaAGGCCGa -3'
miRNA:   3'- -CGCUGU--CUGaau--------UGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 19301 0.66 0.93823
Target:  5'- aGCaGCAGGCacAGCCGCaCAacGGCCu -3'
miRNA:   3'- -CGcUGUCUGaaUUGGCG-GUauUCGGu -5'
12771 5' -50 NC_003387.1 + 19980 0.68 0.87767
Target:  5'- uUGACAGcCcgAAUCGCCG-AGGCCAc -3'
miRNA:   3'- cGCUGUCuGaaUUGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 20678 0.67 0.89319
Target:  5'- gGCGACAGACUUGcgacCCGaCUcgGGGgCGa -3'
miRNA:   3'- -CGCUGUCUGAAUu---GGC-GGuaUUCgGU- -5'
12771 5' -50 NC_003387.1 + 20785 0.68 0.852334
Target:  5'- uGCGACcGGCgcgGAuCUGCUcgGUGAGCCAc -3'
miRNA:   3'- -CGCUGuCUGaa-UU-GGCGG--UAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 21375 0.72 0.663503
Target:  5'- gGUGcCAGACgacgacACCGCCAaGAGCCu -3'
miRNA:   3'- -CGCuGUCUGaau---UGGCGGUaUUCGGu -5'
12771 5' -50 NC_003387.1 + 24936 0.74 0.526803
Target:  5'- cGCGACcGACggcgGGCCGCCugauGGCCu -3'
miRNA:   3'- -CGCUGuCUGaa--UUGGCGGuau-UCGGu -5'
12771 5' -50 NC_003387.1 + 25422 0.68 0.87767
Target:  5'- gGCGACGcGGCUcucaagGGCCGCCAgugcGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAa-----UUGGCGGUau--UCGgu -5'
12771 5' -50 NC_003387.1 + 25641 0.72 0.674952
Target:  5'- gGUGGCAcGACUacGCCGCCAaGGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAauUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 25774 0.68 0.87767
Target:  5'- uGUGAU-GACguuaUUGACCGCCGacaGGGCCAg -3'
miRNA:   3'- -CGCUGuCUG----AAUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 26481 0.66 0.926265
Target:  5'- gGCGGCGGugUUGcggcuaagaaugcGCUGCCcgAggagugcgaGGCCGa -3'
miRNA:   3'- -CGCUGUCugAAU-------------UGGCGGuaU---------UCGGU- -5'
12771 5' -50 NC_003387.1 + 26601 0.68 0.861044
Target:  5'- gGCGACGGACgc-GCCGaCCu--GGCgCAg -3'
miRNA:   3'- -CGCUGUCUGaauUGGC-GGuauUCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.