miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 1185 0.66 0.924447
Target:  5'- aGCGGCGGGCgcaggggcaagggUGGCCGUCGacgGGGCa- -3'
miRNA:   3'- -CGCUGUCUGa------------AUUGGCGGUa--UUCGgu -5'
12771 5' -50 NC_003387.1 + 1639 0.67 0.884794
Target:  5'- gGCuGAUGGACgacgacGGCCGCCAcgucgaggaggugUGGGCCGg -3'
miRNA:   3'- -CG-CUGUCUGaa----UUGGCGGU-------------AUUCGGU- -5'
12771 5' -50 NC_003387.1 + 1944 0.66 0.926865
Target:  5'- cGCGACgcaggcgguugGGGCUggGACCGCCGcGAcCCGa -3'
miRNA:   3'- -CGCUG-----------UCUGAa-UUGGCGGUaUUcGGU- -5'
12771 5' -50 NC_003387.1 + 2338 0.68 0.852334
Target:  5'- uCGGCGGugUcgaGGCCGCCGUcGGCg- -3'
miRNA:   3'- cGCUGUCugAa--UUGGCGGUAuUCGgu -5'
12771 5' -50 NC_003387.1 + 2556 0.7 0.77446
Target:  5'- cGCGGCAGAUcc--UCGCCGUGuacGCCGa -3'
miRNA:   3'- -CGCUGUCUGaauuGGCGGUAUu--CGGU- -5'
12771 5' -50 NC_003387.1 + 3128 0.67 0.900519
Target:  5'- aGCGGCAG-C---ACUGCCA--GGCCAc -3'
miRNA:   3'- -CGCUGUCuGaauUGGCGGUauUCGGU- -5'
12771 5' -50 NC_003387.1 + 4891 0.66 0.93823
Target:  5'- uCGACAGGCUgauCUGCCGggugcgguAGCUg -3'
miRNA:   3'- cGCUGUCUGAauuGGCGGUau------UCGGu -5'
12771 5' -50 NC_003387.1 + 4955 0.67 0.907554
Target:  5'- cGUGACAGACc-AGCCGgUCA--GGCCGu -3'
miRNA:   3'- -CGCUGUCUGaaUUGGC-GGUauUCGGU- -5'
12771 5' -50 NC_003387.1 + 5900 0.66 0.926865
Target:  5'- cGCGGCAGAagcaUUGcGCCGCUuacgcGCCGg -3'
miRNA:   3'- -CGCUGUCUg---AAU-UGGCGGuauu-CGGU- -5'
12771 5' -50 NC_003387.1 + 6424 0.67 0.907554
Target:  5'- aGCGGCccGCUgcGCCGCCugcucGGCCu -3'
miRNA:   3'- -CGCUGucUGAauUGGCGGuau--UCGGu -5'
12771 5' -50 NC_003387.1 + 7088 0.66 0.943461
Target:  5'- gGCGGCcGAuCUUcGCCucGCCGUAcGCCGa -3'
miRNA:   3'- -CGCUGuCU-GAAuUGG--CGGUAUuCGGU- -5'
12771 5' -50 NC_003387.1 + 7178 0.68 0.861044
Target:  5'- gGCGGCGGAUcgccuuGCCGCac--GGCCAg -3'
miRNA:   3'- -CGCUGUCUGaau---UGGCGguauUCGGU- -5'
12771 5' -50 NC_003387.1 + 7539 0.68 0.852334
Target:  5'- aGCGGCAcuGCU--GCCGCCcu-GGCCGa -3'
miRNA:   3'- -CGCUGUc-UGAauUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 7623 0.67 0.914292
Target:  5'- cGCGGCGucGACgaccUGGCCGCCGaacaccGGCCc -3'
miRNA:   3'- -CGCUGU--CUGa---AUUGGCGGUau----UCGGu -5'
12771 5' -50 NC_003387.1 + 7751 0.67 0.89319
Target:  5'- gGCGGCAGcgGCgaucGCgGCC-UGAGCCGc -3'
miRNA:   3'- -CGCUGUC--UGaau-UGgCGGuAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 7841 0.66 0.920729
Target:  5'- gGCGcGCAGGCggAAUCGCCGac-GCCc -3'
miRNA:   3'- -CGC-UGUCUGaaUUGGCGGUauuCGGu -5'
12771 5' -50 NC_003387.1 + 8219 0.82 0.198176
Target:  5'- aCGaACAGACgcAACUGCCGUGAGCCGu -3'
miRNA:   3'- cGC-UGUCUGaaUUGGCGGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 10677 0.67 0.906171
Target:  5'- uGCGACcacggccgccucGGCggUGGCCGCCGguaucAAGCCGg -3'
miRNA:   3'- -CGCUGu-----------CUGa-AUUGGCGGUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 10851 0.68 0.868659
Target:  5'- gGCuGCAGGCcgUgcccgcucaucacGACCGCCGUcGGCCGc -3'
miRNA:   3'- -CGcUGUCUGa-A-------------UUGGCGGUAuUCGGU- -5'
12771 5' -50 NC_003387.1 + 11792 0.66 0.93823
Target:  5'- gGCGACcaGCUc-GCCGuCCAUcAGGCCAc -3'
miRNA:   3'- -CGCUGucUGAauUGGC-GGUA-UUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.