miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 52288 1.11 0.00229
Target:  5'- gGCGACAGACUUAACCGCCAUAAGCCAc -3'
miRNA:   3'- -CGCUGUCUGAAUUGGCGGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 8219 0.82 0.198176
Target:  5'- aCGaACAGACgcAACUGCCGUGAGCCGu -3'
miRNA:   3'- cGC-UGUCUGaaUUGGCGGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 15449 0.77 0.373736
Target:  5'- cGCGcCAGGCgccuUGACCGCCAcgcGGGCCGa -3'
miRNA:   3'- -CGCuGUCUGa---AUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 28223 0.76 0.411614
Target:  5'- uGCGGCuGACg-AACCGCCGgucGGCCAg -3'
miRNA:   3'- -CGCUGuCUGaaUUGGCGGUau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 24936 0.74 0.526803
Target:  5'- cGCGACcGACggcgGGCCGCCugauGGCCu -3'
miRNA:   3'- -CGCUGuCUGaa--UUGGCGGuau-UCGGu -5'
12771 5' -50 NC_003387.1 + 17017 0.74 0.537924
Target:  5'- aGCGGCAGGCcgUcgUCGCCGUAcGGCCc -3'
miRNA:   3'- -CGCUGUCUGa-AuuGGCGGUAU-UCGGu -5'
12771 5' -50 NC_003387.1 + 32238 0.74 0.549123
Target:  5'- cGCGACGaGCUggccGACCGCCu--GGCCGu -3'
miRNA:   3'- -CGCUGUcUGAa---UUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 47930 0.73 0.617507
Target:  5'- gGCGGCAGGCaugGGCacgaCGCCGUGugGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaa-UUG----GCGGUAU--UCGGU- -5'
12771 5' -50 NC_003387.1 + 30217 0.72 0.662357
Target:  5'- cGCGGCGGGCaUGAUccauucgCGCCAguuGGCCGg -3'
miRNA:   3'- -CGCUGUCUGaAUUG-------GCGGUau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 21375 0.72 0.663503
Target:  5'- gGUGcCAGACgacgacACCGCCAaGAGCCu -3'
miRNA:   3'- -CGCuGUCUGaau---UGGCGGUaUUCGGu -5'
12771 5' -50 NC_003387.1 + 34850 0.72 0.674952
Target:  5'- uUGAgGGGCU--GCUGCCGUGAGCgCAa -3'
miRNA:   3'- cGCUgUCUGAauUGGCGGUAUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 25641 0.72 0.674952
Target:  5'- gGUGGCAcGACUacGCCGCCAaGGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAauUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 18609 0.71 0.6818
Target:  5'- cGCGACGucGACgccgccgaucuGCCGCCGaAGGCCGa -3'
miRNA:   3'- -CGCUGU--CUGaau--------UGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 17734 0.71 0.686356
Target:  5'- cCGGCccGGCcgGGCCGCCAgGGGCCAc -3'
miRNA:   3'- cGCUGu-CUGaaUUGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 50841 0.71 0.708982
Target:  5'- aGCG-CGGGC-UGAUCGCCAUGcGUCAa -3'
miRNA:   3'- -CGCuGUCUGaAUUGGCGGUAUuCGGU- -5'
12771 5' -50 NC_003387.1 + 26766 0.71 0.731276
Target:  5'- aGCGAUcGGCcUGGCCGCCGaAGGCa- -3'
miRNA:   3'- -CGCUGuCUGaAUUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 39001 0.7 0.750975
Target:  5'- uGCG-CAGGCUgaucgcccugcGCCGCC-UGGGCCGc -3'
miRNA:   3'- -CGCuGUCUGAau---------UGGCGGuAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 41596 0.7 0.753138
Target:  5'- cGCGGCGGucaGCUUGucgaACaCGcCCAUAAGCCc -3'
miRNA:   3'- -CGCUGUC---UGAAU----UG-GC-GGUAUUCGGu -5'
12771 5' -50 NC_003387.1 + 35491 0.7 0.753138
Target:  5'- aGUGACAGcaaGCg--GCCGUgGUGGGCCGa -3'
miRNA:   3'- -CGCUGUC---UGaauUGGCGgUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 48258 0.7 0.763873
Target:  5'- cGCGGCGGGCUcGGCgGUCGgcucGGCCu -3'
miRNA:   3'- -CGCUGUCUGAaUUGgCGGUau--UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.