miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 24936 0.74 0.526803
Target:  5'- cGCGACcGACggcgGGCCGCCugauGGCCu -3'
miRNA:   3'- -CGCUGuCUGaa--UUGGCGGuau-UCGGu -5'
12771 5' -50 NC_003387.1 + 17030 0.67 0.89319
Target:  5'- cGCGGCGG-CU--GCCGCCcuc-GCCGg -3'
miRNA:   3'- -CGCUGUCuGAauUGGCGGuauuCGGU- -5'
12771 5' -50 NC_003387.1 + 49182 0.67 0.906864
Target:  5'- cGCG-CAGGCggcGGCCGUCGacguugcUGAGCCc -3'
miRNA:   3'- -CGCuGUCUGaa-UUGGCGGU-------AUUCGGu -5'
12771 5' -50 NC_003387.1 + 17571 0.66 0.941923
Target:  5'- gGCGACAacgccccgcuggucGACcugcagUGGCCGCCGcuUGAGCa- -3'
miRNA:   3'- -CGCUGU--------------CUGa-----AUUGGCGGU--AUUCGgu -5'
12771 5' -50 NC_003387.1 + 34850 0.72 0.674952
Target:  5'- uUGAgGGGCU--GCUGCCGUGAGCgCAa -3'
miRNA:   3'- cGCUgUCUGAauUGGCGGUAUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 18609 0.71 0.6818
Target:  5'- cGCGACGucGACgccgccgaucuGCCGCCGaAGGCCGa -3'
miRNA:   3'- -CGCUGU--CUGaau--------UGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 26766 0.71 0.731276
Target:  5'- aGCGAUcGGCcUGGCCGCCGaAGGCa- -3'
miRNA:   3'- -CGCUGuCUGaAUUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 35491 0.7 0.753138
Target:  5'- aGUGACAGcaaGCg--GCCGUgGUGGGCCGa -3'
miRNA:   3'- -CGCUGUC---UGaauUGGCGgUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 37202 0.69 0.824731
Target:  5'- cGCGugcaGCAGGCggUGcucauaaacGCCGCCGUGGGCg- -3'
miRNA:   3'- -CGC----UGUCUGa-AU---------UGGCGGUAUUCGgu -5'
12771 5' -50 NC_003387.1 + 43887 0.67 0.885571
Target:  5'- cGCGcACGGug--AGCCGCUcgucgAUAGGCCAa -3'
miRNA:   3'- -CGC-UGUCugaaUUGGCGG-----UAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 7539 0.68 0.852334
Target:  5'- aGCGGCAcuGCU--GCCGCCcu-GGCCGa -3'
miRNA:   3'- -CGCUGUc-UGAauUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 36843 0.69 0.795139
Target:  5'- gGCGGCGGcGCUgUGACCGCCcucAAGCa- -3'
miRNA:   3'- -CGCUGUC-UGA-AUUGGCGGua-UUCGgu -5'
12771 5' -50 NC_003387.1 + 32238 0.74 0.549123
Target:  5'- cGCGACGaGCUggccGACCGCCu--GGCCGu -3'
miRNA:   3'- -CGCUGUcUGAa---UUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 35358 0.68 0.87767
Target:  5'- -aGACAGGCUcgccgcaccUGAUCGCCGUc-GCCu -3'
miRNA:   3'- cgCUGUCUGA---------AUUGGCGGUAuuCGGu -5'
12771 5' -50 NC_003387.1 + 47930 0.73 0.617507
Target:  5'- gGCGGCAGGCaugGGCacgaCGCCGUGugGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaa-UUG----GCGGUAU--UCGGU- -5'
12771 5' -50 NC_003387.1 + 2556 0.7 0.77446
Target:  5'- cGCGGCAGAUcc--UCGCCGUGuacGCCGa -3'
miRNA:   3'- -CGCUGUCUGaauuGGCGGUAUu--CGGU- -5'
12771 5' -50 NC_003387.1 + 1639 0.67 0.884794
Target:  5'- gGCuGAUGGACgacgacGGCCGCCAcgucgaggaggugUGGGCCGg -3'
miRNA:   3'- -CG-CUGUCUGaa----UUGGCGGU-------------AUUCGGU- -5'
12771 5' -50 NC_003387.1 + 10677 0.67 0.906171
Target:  5'- uGCGACcacggccgccucGGCggUGGCCGCCGguaucAAGCCGg -3'
miRNA:   3'- -CGCUGu-----------CUGa-AUUGGCGGUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 25641 0.72 0.674952
Target:  5'- gGUGGCAcGACUacGCCGCCAaGGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAauUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 17734 0.71 0.686356
Target:  5'- cCGGCccGGCcgGGCCGCCAgGGGCCAc -3'
miRNA:   3'- cGCUGu-CUGaaUUGGCGGUaUUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.