miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 19980 0.68 0.87767
Target:  5'- uUGACAGcCcgAAUCGCCG-AGGCCAc -3'
miRNA:   3'- cGCUGUCuGaaUUGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 20678 0.67 0.89319
Target:  5'- gGCGACAGACUUGcgacCCGaCUcgGGGgCGa -3'
miRNA:   3'- -CGCUGUCUGAAUu---GGC-GGuaUUCgGU- -5'
12771 5' -50 NC_003387.1 + 7751 0.67 0.89319
Target:  5'- gGCGGCAGcgGCgaucGCgGCC-UGAGCCGc -3'
miRNA:   3'- -CGCUGUC--UGaau-UGgCGGuAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 31260 0.67 0.885572
Target:  5'- gGCG-CGGGCUg---CGCCAgcgGGGCCGg -3'
miRNA:   3'- -CGCuGUCUGAauugGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 48653 0.67 0.885572
Target:  5'- uGCGGCAGAacccGCaCGCCGUGA-CCGa -3'
miRNA:   3'- -CGCUGUCUgaauUG-GCGGUAUUcGGU- -5'
12771 5' -50 NC_003387.1 + 43185 0.67 0.884794
Target:  5'- gGCGGCGG-CUUGcgcaggcACCGCUugacGGCCAc -3'
miRNA:   3'- -CGCUGUCuGAAU-------UGGCGGuau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 25774 0.68 0.87767
Target:  5'- uGUGAU-GACguuaUUGACCGCCGacaGGGCCAg -3'
miRNA:   3'- -CGCUGuCUG----AAUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 30098 0.68 0.87767
Target:  5'- uCGGCGGGCggccagGGCCGCCAagugaccuUGGGCgAg -3'
miRNA:   3'- cGCUGUCUGaa----UUGGCGGU--------AUUCGgU- -5'
12771 5' -50 NC_003387.1 + 28888 0.68 0.87767
Target:  5'- uGCGGCGG-CUUAGgCGCgGgcgccGGGCCAc -3'
miRNA:   3'- -CGCUGUCuGAAUUgGCGgUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 3128 0.67 0.900519
Target:  5'- aGCGGCAG-C---ACUGCCA--GGCCAc -3'
miRNA:   3'- -CGCUGUCuGaauUGGCGGUauUCGGU- -5'
12771 5' -50 NC_003387.1 + 6424 0.67 0.907554
Target:  5'- aGCGGCccGCUgcGCCGCCugcucGGCCu -3'
miRNA:   3'- -CGCUGucUGAauUGGCGGuau--UCGGu -5'
12771 5' -50 NC_003387.1 + 4955 0.67 0.907554
Target:  5'- cGUGACAGACc-AGCCGgUCA--GGCCGu -3'
miRNA:   3'- -CGCUGUCUGaaUUGGC-GGUauUCGGU- -5'
12771 5' -50 NC_003387.1 + 11792 0.66 0.93823
Target:  5'- gGCGACcaGCUc-GCCGuCCAUcAGGCCAc -3'
miRNA:   3'- -CGCUGucUGAauUGGC-GGUA-UUCGGU- -5'
12771 5' -50 NC_003387.1 + 4891 0.66 0.93823
Target:  5'- uCGACAGGCUgauCUGCCGggugcgguAGCUg -3'
miRNA:   3'- cGCUGUCUGAauuGGCGGUau------UCGGu -5'
12771 5' -50 NC_003387.1 + 19301 0.66 0.93823
Target:  5'- aGCaGCAGGCacAGCCGCaCAacGGCCu -3'
miRNA:   3'- -CGcUGUCUGaaUUGGCG-GUauUCGGu -5'
12771 5' -50 NC_003387.1 + 41687 0.66 0.926865
Target:  5'- cGCGACAuagcGGCcuucauguUCGCCAUcGAGCCAa -3'
miRNA:   3'- -CGCUGU----CUGaauu----GGCGGUA-UUCGGU- -5'
12771 5' -50 NC_003387.1 + 1185 0.66 0.924447
Target:  5'- aGCGGCGGGCgcaggggcaagggUGGCCGUCGacgGGGCa- -3'
miRNA:   3'- -CGCUGUCUGa------------AUUGGCGGUa--UUCGgu -5'
12771 5' -50 NC_003387.1 + 18231 0.66 0.920729
Target:  5'- aGCGGCGGGCgu-ACU--CGUAGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaauUGGcgGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 27215 0.66 0.920729
Target:  5'- gGCGAUcagcuuGGACUUGaACCGCUGcAGGUCGc -3'
miRNA:   3'- -CGCUG------UCUGAAU-UGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 7623 0.67 0.914292
Target:  5'- cGCGGCGucGACgaccUGGCCGCCGaacaccGGCCc -3'
miRNA:   3'- -CGCUGU--CUGa---AUUGGCGGUau----UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.