miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 10677 0.67 0.906171
Target:  5'- uGCGACcacggccgccucGGCggUGGCCGCCGguaucAAGCCGg -3'
miRNA:   3'- -CGCUGu-----------CUGa-AUUGGCGGUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 33377 0.66 0.926865
Target:  5'- cGCgGGCGGAUgggacGCCGCCGcAGGCaCAu -3'
miRNA:   3'- -CG-CUGUCUGaau--UGGCGGUaUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 17030 0.67 0.89319
Target:  5'- cGCGGCGG-CU--GCCGCCcuc-GCCGg -3'
miRNA:   3'- -CGCUGUCuGAauUGGCGGuauuCGGU- -5'
12771 5' -50 NC_003387.1 + 47930 0.73 0.617507
Target:  5'- gGCGGCAGGCaugGGCacgaCGCCGUGugGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaa-UUG----GCGGUAU--UCGGU- -5'
12771 5' -50 NC_003387.1 + 5900 0.66 0.926865
Target:  5'- cGCGGCAGAagcaUUGcGCCGCUuacgcGCCGg -3'
miRNA:   3'- -CGCUGUCUg---AAU-UGGCGGuauu-CGGU- -5'
12771 5' -50 NC_003387.1 + 26481 0.66 0.926265
Target:  5'- gGCGGCGGugUUGcggcuaagaaugcGCUGCCcgAggagugcgaGGCCGa -3'
miRNA:   3'- -CGCUGUCugAAU-------------UGGCGGuaU---------UCGGU- -5'
12771 5' -50 NC_003387.1 + 40353 0.66 0.932698
Target:  5'- uGCaGCAGGCcgUGAUCGCgGccgGGGCCAa -3'
miRNA:   3'- -CGcUGUCUGa-AUUGGCGgUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 17571 0.66 0.941923
Target:  5'- gGCGACAacgccccgcuggucGACcugcagUGGCCGCCGcuUGAGCa- -3'
miRNA:   3'- -CGCUGU--------------CUGa-----AUUGGCGGU--AUUCGgu -5'
12771 5' -50 NC_003387.1 + 32238 0.74 0.549123
Target:  5'- cGCGACGaGCUggccGACCGCCu--GGCCGu -3'
miRNA:   3'- -CGCUGUcUGAa---UUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 24936 0.74 0.526803
Target:  5'- cGCGACcGACggcgGGCCGCCugauGGCCu -3'
miRNA:   3'- -CGCUGuCUGaa--UUGGCGGuau-UCGGu -5'
12771 5' -50 NC_003387.1 + 34850 0.72 0.674952
Target:  5'- uUGAgGGGCU--GCUGCCGUGAGCgCAa -3'
miRNA:   3'- cGCUgUCUGAauUGGCGGUAUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 25641 0.72 0.674952
Target:  5'- gGUGGCAcGACUacGCCGCCAaGGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAauUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 18231 0.66 0.920729
Target:  5'- aGCGGCGGGCgu-ACU--CGUAGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaauUGGcgGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 12582 0.69 0.795139
Target:  5'- cCGACGGugU----CGCCGUGGGCCu -3'
miRNA:   3'- cGCUGUCugAauugGCGGUAUUCGGu -5'
12771 5' -50 NC_003387.1 + 27250 0.69 0.805205
Target:  5'- cCGACAGGaugcGCCGC-AUGAGCCGc -3'
miRNA:   3'- cGCUGUCUgaauUGGCGgUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 40350 0.69 0.815074
Target:  5'- aGCGGCAGAUUgcgGGCCGUCGc-GGCg- -3'
miRNA:   3'- -CGCUGUCUGAa--UUGGCGGUauUCGgu -5'
12771 5' -50 NC_003387.1 + 2338 0.68 0.852334
Target:  5'- uCGGCGGugUcgaGGCCGCCGUcGGCg- -3'
miRNA:   3'- cGCUGUCugAa--UUGGCGGUAuUCGgu -5'
12771 5' -50 NC_003387.1 + 20785 0.68 0.852334
Target:  5'- uGCGACcGGCgcgGAuCUGCUcgGUGAGCCAc -3'
miRNA:   3'- -CGCUGuCUGaa-UU-GGCGG--UAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 7751 0.67 0.89319
Target:  5'- gGCGGCAGcgGCgaucGCgGCC-UGAGCCGc -3'
miRNA:   3'- -CGCUGUC--UGaau-UGgCGGuAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 31260 0.67 0.885572
Target:  5'- gGCG-CGGGCUg---CGCCAgcgGGGCCGg -3'
miRNA:   3'- -CGCuGUCUGAauugGCGGUa--UUCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.