miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 1185 0.66 0.924447
Target:  5'- aGCGGCGGGCgcaggggcaagggUGGCCGUCGacgGGGCa- -3'
miRNA:   3'- -CGCUGUCUGa------------AUUGGCGGUa--UUCGgu -5'
12771 5' -50 NC_003387.1 + 41687 0.66 0.926865
Target:  5'- cGCGACAuagcGGCcuucauguUCGCCAUcGAGCCAa -3'
miRNA:   3'- -CGCUGU----CUGaauu----GGCGGUA-UUCGGU- -5'
12771 5' -50 NC_003387.1 + 2338 0.68 0.852334
Target:  5'- uCGGCGGugUcgaGGCCGCCGUcGGCg- -3'
miRNA:   3'- cGCUGUCugAa--UUGGCGGUAuUCGgu -5'
12771 5' -50 NC_003387.1 + 4891 0.66 0.93823
Target:  5'- uCGACAGGCUgauCUGCCGggugcgguAGCUg -3'
miRNA:   3'- cGCUGUCUGAauuGGCGGUau------UCGGu -5'
12771 5' -50 NC_003387.1 + 20785 0.68 0.852334
Target:  5'- uGCGACcGGCgcgGAuCUGCUcgGUGAGCCAc -3'
miRNA:   3'- -CGCUGuCUGaa-UU-GGCGG--UAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 20678 0.67 0.89319
Target:  5'- gGCGACAGACUUGcgacCCGaCUcgGGGgCGa -3'
miRNA:   3'- -CGCUGUCUGAAUu---GGC-GGuaUUCgGU- -5'
12771 5' -50 NC_003387.1 + 7751 0.67 0.89319
Target:  5'- gGCGGCAGcgGCgaucGCgGCC-UGAGCCGc -3'
miRNA:   3'- -CGCUGUC--UGaau-UGgCGGuAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 31260 0.67 0.885572
Target:  5'- gGCG-CGGGCUg---CGCCAgcgGGGCCGg -3'
miRNA:   3'- -CGCuGUCUGAauugGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 19980 0.68 0.87767
Target:  5'- uUGACAGcCcgAAUCGCCG-AGGCCAc -3'
miRNA:   3'- cGCUGUCuGaaUUGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 28888 0.68 0.87767
Target:  5'- uGCGGCGG-CUUAGgCGCgGgcgccGGGCCAc -3'
miRNA:   3'- -CGCUGUCuGAAUUgGCGgUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 30098 0.68 0.87767
Target:  5'- uCGGCGGGCggccagGGCCGCCAagugaccuUGGGCgAg -3'
miRNA:   3'- cGCUGUCUGaa----UUGGCGGU--------AUUCGgU- -5'
12771 5' -50 NC_003387.1 + 30217 0.72 0.662357
Target:  5'- cGCGGCGGGCaUGAUccauucgCGCCAguuGGCCGg -3'
miRNA:   3'- -CGCUGUCUGaAUUG-------GCGGUau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 17017 0.74 0.537924
Target:  5'- aGCGGCAGGCcgUcgUCGCCGUAcGGCCc -3'
miRNA:   3'- -CGCUGUCUGa-AuuGGCGGUAU-UCGGu -5'
12771 5' -50 NC_003387.1 + 28223 0.76 0.411614
Target:  5'- uGCGGCuGACg-AACCGCCGgucGGCCAg -3'
miRNA:   3'- -CGCUGuCUGaaUUGGCGGUau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 15449 0.77 0.373736
Target:  5'- cGCGcCAGGCgccuUGACCGCCAcgcGGGCCGa -3'
miRNA:   3'- -CGCuGUCUGa---AUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 8219 0.82 0.198176
Target:  5'- aCGaACAGACgcAACUGCCGUGAGCCGu -3'
miRNA:   3'- cGC-UGUCUGaaUUGGCGGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 52288 1.11 0.00229
Target:  5'- gGCGACAGACUUAACCGCCAUAAGCCAc -3'
miRNA:   3'- -CGCUGUCUGAAUUGGCGGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 10851 0.68 0.868659
Target:  5'- gGCuGCAGGCcgUgcccgcucaucacGACCGCCGUcGGCCGc -3'
miRNA:   3'- -CGcUGUCUGa-A-------------UUGGCGGUAuUCGGU- -5'
12771 5' -50 NC_003387.1 + 26601 0.68 0.861044
Target:  5'- gGCGACGGACgc-GCCGaCCu--GGCgCAg -3'
miRNA:   3'- -CGCUGUCUGaauUGGC-GGuauUCG-GU- -5'
12771 5' -50 NC_003387.1 + 12582 0.69 0.795139
Target:  5'- cCGACGGugU----CGCCGUGGGCCu -3'
miRNA:   3'- cGCUGUCugAauugGCGGUAUUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.