miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 2556 0.7 0.77446
Target:  5'- cGCGGCAGAUcc--UCGCCGUGuacGCCGa -3'
miRNA:   3'- -CGCUGUCUGaauuGGCGGUAUu--CGGU- -5'
12771 5' -50 NC_003387.1 + 39315 0.7 0.77446
Target:  5'- gGCGAgCGccGACUUAACCGUC---GGCCAc -3'
miRNA:   3'- -CGCU-GU--CUGAAUUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 12582 0.69 0.795139
Target:  5'- cCGACGGugU----CGCCGUGGGCCu -3'
miRNA:   3'- cGCUGUCugAauugGCGGUAUUCGGu -5'
12771 5' -50 NC_003387.1 + 36843 0.69 0.795139
Target:  5'- gGCGGCGGcGCUgUGACCGCCcucAAGCa- -3'
miRNA:   3'- -CGCUGUC-UGA-AUUGGCGGua-UUCGgu -5'
12771 5' -50 NC_003387.1 + 27250 0.69 0.805205
Target:  5'- cCGACAGGaugcGCCGC-AUGAGCCGc -3'
miRNA:   3'- cGCUGUCUgaauUGGCGgUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 40350 0.69 0.815074
Target:  5'- aGCGGCAGAUUgcgGGCCGUCGc-GGCg- -3'
miRNA:   3'- -CGCUGUCUGAa--UUGGCGGUauUCGgu -5'
12771 5' -50 NC_003387.1 + 37202 0.69 0.824731
Target:  5'- cGCGugcaGCAGGCggUGcucauaaacGCCGCCGUGGGCg- -3'
miRNA:   3'- -CGC----UGUCUGa-AU---------UGGCGGUAUUCGgu -5'
12771 5' -50 NC_003387.1 + 42221 0.68 0.843372
Target:  5'- gGCGACcGGCgc-ACCGCgAUGGGCgAg -3'
miRNA:   3'- -CGCUGuCUGaauUGGCGgUAUUCGgU- -5'
12771 5' -50 NC_003387.1 + 2338 0.68 0.852334
Target:  5'- uCGGCGGugUcgaGGCCGCCGUcGGCg- -3'
miRNA:   3'- cGCUGUCugAa--UUGGCGGUAuUCGgu -5'
12771 5' -50 NC_003387.1 + 7539 0.68 0.852334
Target:  5'- aGCGGCAcuGCU--GCCGCCcu-GGCCGa -3'
miRNA:   3'- -CGCUGUc-UGAauUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 20785 0.68 0.852334
Target:  5'- uGCGACcGGCgcgGAuCUGCUcgGUGAGCCAc -3'
miRNA:   3'- -CGCUGuCUGaa-UU-GGCGG--UAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 7178 0.68 0.861044
Target:  5'- gGCGGCGGAUcgccuuGCCGCac--GGCCAg -3'
miRNA:   3'- -CGCUGUCUGaau---UGGCGguauUCGGU- -5'
12771 5' -50 NC_003387.1 + 26601 0.68 0.861044
Target:  5'- gGCGACGGACgc-GCCGaCCu--GGCgCAg -3'
miRNA:   3'- -CGCUGUCUGaauUGGC-GGuauUCG-GU- -5'
12771 5' -50 NC_003387.1 + 10851 0.68 0.868659
Target:  5'- gGCuGCAGGCcgUgcccgcucaucacGACCGCCGUcGGCCGc -3'
miRNA:   3'- -CGcUGUCUGa-A-------------UUGGCGGUAuUCGGU- -5'
12771 5' -50 NC_003387.1 + 28888 0.68 0.87767
Target:  5'- uGCGGCGG-CUUAGgCGCgGgcgccGGGCCAc -3'
miRNA:   3'- -CGCUGUCuGAAUUgGCGgUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 25774 0.68 0.87767
Target:  5'- uGUGAU-GACguuaUUGACCGCCGacaGGGCCAg -3'
miRNA:   3'- -CGCUGuCUG----AAUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 25422 0.68 0.87767
Target:  5'- gGCGACGcGGCUcucaagGGCCGCCAgugcGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAa-----UUGGCGGUau--UCGgu -5'
12771 5' -50 NC_003387.1 + 35358 0.68 0.87767
Target:  5'- -aGACAGGCUcgccgcaccUGAUCGCCGUc-GCCu -3'
miRNA:   3'- cgCUGUCUGA---------AUUGGCGGUAuuCGGu -5'
12771 5' -50 NC_003387.1 + 19980 0.68 0.87767
Target:  5'- uUGACAGcCcgAAUCGCCG-AGGCCAc -3'
miRNA:   3'- cGCUGUCuGaaUUGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 30098 0.68 0.87767
Target:  5'- uCGGCGGGCggccagGGCCGCCAagugaccuUGGGCgAg -3'
miRNA:   3'- cGCUGUCUGaa----UUGGCGGU--------AUUCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.