miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 52517 0.66 0.938229
Target:  5'- cGCGACAagagcGACa-AGCCGCCGagcUGgcGGCCGg -3'
miRNA:   3'- -CGCUGU-----CUGaaUUGGCGGU---AU--UCGGU- -5'
12771 5' -50 NC_003387.1 + 52288 1.11 0.00229
Target:  5'- gGCGACAGACUUAACCGCCAUAAGCCAc -3'
miRNA:   3'- -CGCUGUCUGAAUUGGCGGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 50841 0.71 0.708982
Target:  5'- aGCG-CGGGC-UGAUCGCCAUGcGUCAa -3'
miRNA:   3'- -CGCuGUCUGaAUUGGCGGUAUuCGGU- -5'
12771 5' -50 NC_003387.1 + 49182 0.67 0.906864
Target:  5'- cGCG-CAGGCggcGGCCGUCGacguugcUGAGCCc -3'
miRNA:   3'- -CGCuGUCUGaa-UUGGCGGU-------AUUCGGu -5'
12771 5' -50 NC_003387.1 + 48653 0.67 0.885572
Target:  5'- uGCGGCAGAacccGCaCGCCGUGA-CCGa -3'
miRNA:   3'- -CGCUGUCUgaauUG-GCGGUAUUcGGU- -5'
12771 5' -50 NC_003387.1 + 48258 0.7 0.763873
Target:  5'- cGCGGCGGGCUcGGCgGUCGgcucGGCCu -3'
miRNA:   3'- -CGCUGUCUGAaUUGgCGGUau--UCGGu -5'
12771 5' -50 NC_003387.1 + 48132 0.66 0.920729
Target:  5'- cGUGGCAGACccgcgcgcAGCgCGCCAccgAGGCCc -3'
miRNA:   3'- -CGCUGUCUGaa------UUG-GCGGUa--UUCGGu -5'
12771 5' -50 NC_003387.1 + 47930 0.73 0.617507
Target:  5'- gGCGGCAGGCaugGGCacgaCGCCGUGugGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaa-UUG----GCGGUAU--UCGGU- -5'
12771 5' -50 NC_003387.1 + 45547 0.67 0.911632
Target:  5'- uGCGGCaAGGCgauccGCCGCCAgcucgucggcacGGCCGa -3'
miRNA:   3'- -CGCUG-UCUGaau--UGGCGGUau----------UCGGU- -5'
12771 5' -50 NC_003387.1 + 43887 0.67 0.885571
Target:  5'- cGCGcACGGug--AGCCGCUcgucgAUAGGCCAa -3'
miRNA:   3'- -CGC-UGUCugaaUUGGCGG-----UAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 43185 0.67 0.884794
Target:  5'- gGCGGCGG-CUUGcgcaggcACCGCUugacGGCCAc -3'
miRNA:   3'- -CGCUGUCuGAAU-------UGGCGGuau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 42221 0.68 0.843372
Target:  5'- gGCGACcGGCgc-ACCGCgAUGGGCgAg -3'
miRNA:   3'- -CGCUGuCUGaauUGGCGgUAUUCGgU- -5'
12771 5' -50 NC_003387.1 + 41687 0.66 0.926865
Target:  5'- cGCGACAuagcGGCcuucauguUCGCCAUcGAGCCAa -3'
miRNA:   3'- -CGCUGU----CUGaauu----GGCGGUA-UUCGGU- -5'
12771 5' -50 NC_003387.1 + 41596 0.7 0.753138
Target:  5'- cGCGGCGGucaGCUUGucgaACaCGcCCAUAAGCCc -3'
miRNA:   3'- -CGCUGUC---UGAAU----UG-GC-GGUAUUCGGu -5'
12771 5' -50 NC_003387.1 + 40353 0.66 0.932698
Target:  5'- uGCaGCAGGCcgUGAUCGCgGccgGGGCCAa -3'
miRNA:   3'- -CGcUGUCUGa-AUUGGCGgUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 40350 0.69 0.815074
Target:  5'- aGCGGCAGAUUgcgGGCCGUCGc-GGCg- -3'
miRNA:   3'- -CGCUGUCUGAa--UUGGCGGUauUCGgu -5'
12771 5' -50 NC_003387.1 + 39315 0.7 0.77446
Target:  5'- gGCGAgCGccGACUUAACCGUC---GGCCAc -3'
miRNA:   3'- -CGCU-GU--CUGAAUUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 39001 0.7 0.750975
Target:  5'- uGCG-CAGGCUgaucgcccugcGCCGCC-UGGGCCGc -3'
miRNA:   3'- -CGCuGUCUGAau---------UGGCGGuAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 37461 0.66 0.926865
Target:  5'- uGCuGGCGGcGCUgcGCCGCCAaaagguGCCGg -3'
miRNA:   3'- -CG-CUGUC-UGAauUGGCGGUauu---CGGU- -5'
12771 5' -50 NC_003387.1 + 37202 0.69 0.824731
Target:  5'- cGCGugcaGCAGGCggUGcucauaaacGCCGCCGUGGGCg- -3'
miRNA:   3'- -CGC----UGUCUGa-AU---------UGGCGGUAUUCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.