miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 36843 0.69 0.795139
Target:  5'- gGCGGCGGcGCUgUGACCGCCcucAAGCa- -3'
miRNA:   3'- -CGCUGUC-UGA-AUUGGCGGua-UUCGgu -5'
12771 5' -50 NC_003387.1 + 35491 0.7 0.753138
Target:  5'- aGUGACAGcaaGCg--GCCGUgGUGGGCCGa -3'
miRNA:   3'- -CGCUGUC---UGaauUGGCGgUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 35358 0.68 0.87767
Target:  5'- -aGACAGGCUcgccgcaccUGAUCGCCGUc-GCCu -3'
miRNA:   3'- cgCUGUCUGA---------AUUGGCGGUAuuCGGu -5'
12771 5' -50 NC_003387.1 + 34850 0.72 0.674952
Target:  5'- uUGAgGGGCU--GCUGCCGUGAGCgCAa -3'
miRNA:   3'- cGCUgUCUGAauUGGCGGUAUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 33377 0.66 0.926865
Target:  5'- cGCgGGCGGAUgggacGCCGCCGcAGGCaCAu -3'
miRNA:   3'- -CG-CUGUCUGaau--UGGCGGUaUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 32238 0.74 0.549123
Target:  5'- cGCGACGaGCUggccGACCGCCu--GGCCGu -3'
miRNA:   3'- -CGCUGUcUGAa---UUGGCGGuauUCGGU- -5'
12771 5' -50 NC_003387.1 + 31260 0.67 0.885572
Target:  5'- gGCG-CGGGCUg---CGCCAgcgGGGCCGg -3'
miRNA:   3'- -CGCuGUCUGAauugGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 30217 0.72 0.662357
Target:  5'- cGCGGCGGGCaUGAUccauucgCGCCAguuGGCCGg -3'
miRNA:   3'- -CGCUGUCUGaAUUG-------GCGGUau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 30098 0.68 0.87767
Target:  5'- uCGGCGGGCggccagGGCCGCCAagugaccuUGGGCgAg -3'
miRNA:   3'- cGCUGUCUGaa----UUGGCGGU--------AUUCGgU- -5'
12771 5' -50 NC_003387.1 + 28888 0.68 0.87767
Target:  5'- uGCGGCGG-CUUAGgCGCgGgcgccGGGCCAc -3'
miRNA:   3'- -CGCUGUCuGAAUUgGCGgUa----UUCGGU- -5'
12771 5' -50 NC_003387.1 + 28223 0.76 0.411614
Target:  5'- uGCGGCuGACg-AACCGCCGgucGGCCAg -3'
miRNA:   3'- -CGCUGuCUGaaUUGGCGGUau-UCGGU- -5'
12771 5' -50 NC_003387.1 + 27250 0.69 0.805205
Target:  5'- cCGACAGGaugcGCCGC-AUGAGCCGc -3'
miRNA:   3'- cGCUGUCUgaauUGGCGgUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 27215 0.66 0.920729
Target:  5'- gGCGAUcagcuuGGACUUGaACCGCUGcAGGUCGc -3'
miRNA:   3'- -CGCUG------UCUGAAU-UGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 26766 0.71 0.731276
Target:  5'- aGCGAUcGGCcUGGCCGCCGaAGGCa- -3'
miRNA:   3'- -CGCUGuCUGaAUUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 26601 0.68 0.861044
Target:  5'- gGCGACGGACgc-GCCGaCCu--GGCgCAg -3'
miRNA:   3'- -CGCUGUCUGaauUGGC-GGuauUCG-GU- -5'
12771 5' -50 NC_003387.1 + 26481 0.66 0.926265
Target:  5'- gGCGGCGGugUUGcggcuaagaaugcGCUGCCcgAggagugcgaGGCCGa -3'
miRNA:   3'- -CGCUGUCugAAU-------------UGGCGGuaU---------UCGGU- -5'
12771 5' -50 NC_003387.1 + 25774 0.68 0.87767
Target:  5'- uGUGAU-GACguuaUUGACCGCCGacaGGGCCAg -3'
miRNA:   3'- -CGCUGuCUG----AAUUGGCGGUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 25641 0.72 0.674952
Target:  5'- gGUGGCAcGACUacGCCGCCAaGGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAauUGGCGGUaUUCGgu -5'
12771 5' -50 NC_003387.1 + 25422 0.68 0.87767
Target:  5'- gGCGACGcGGCUcucaagGGCCGCCAgugcGGCg- -3'
miRNA:   3'- -CGCUGU-CUGAa-----UUGGCGGUau--UCGgu -5'
12771 5' -50 NC_003387.1 + 24936 0.74 0.526803
Target:  5'- cGCGACcGACggcgGGCCGCCugauGGCCu -3'
miRNA:   3'- -CGCUGuCUGaa--UUGGCGGuau-UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.