miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 52260 0.66 0.555085
Target:  5'- -cGCGCCgGucGcCGUCGGcCGCCGCGg -3'
miRNA:   3'- gaCGCGGaCu-C-GCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 29617 0.66 0.555085
Target:  5'- -cGCGCC-GGGCGcCAGcggcUUGCCGUAc -3'
miRNA:   3'- gaCGCGGaCUCGCaGUU----AGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 38531 0.66 0.555085
Target:  5'- -aGCGCCgacGGCGUCAuggUGgCGCAGa -3'
miRNA:   3'- gaCGCGGac-UCGCAGUua-GCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 32588 0.66 0.555085
Target:  5'- gCUGCucauCCUGA-CGUCGAuccugcucgggcUCGCCGCGGg -3'
miRNA:   3'- -GACGc---GGACUcGCAGUU------------AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 29364 0.66 0.54427
Target:  5'- -gGCGaCCUGAcCGUCAGcggCGCCGguGa -3'
miRNA:   3'- gaCGC-GGACUcGCAGUUa--GCGGCguU- -5'
12772 3' -57.5 NC_003387.1 + 10113 0.66 0.54427
Target:  5'- aUGCGCgCUGAGCG-CGaaaagcGUUGgCGCGAa -3'
miRNA:   3'- gACGCG-GACUCGCaGU------UAGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 1862 0.66 0.54427
Target:  5'- -gGCGaCCcaaucGAGCGUCuugCGCUGCAGg -3'
miRNA:   3'- gaCGC-GGa----CUCGCAGuuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 12766 0.66 0.543192
Target:  5'- -cGCGaCCUc-GCGcucguacUCGAUCGCCGCAAu -3'
miRNA:   3'- gaCGC-GGAcuCGC-------AGUUAGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 9483 0.66 0.537814
Target:  5'- -gGCGCCgaacagGAacggcaacacgugguGCGUCAccucgccgAUCGCCGCGu -3'
miRNA:   3'- gaCGCGGa-----CU---------------CGCAGU--------UAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 19674 0.66 0.533525
Target:  5'- gUGCaCCUGGGCGUCGAcggcUCGUucgacgccuCGCAGc -3'
miRNA:   3'- gACGcGGACUCGCAGUU----AGCG---------GCGUU- -5'
12772 3' -57.5 NC_003387.1 + 47586 0.66 0.533525
Target:  5'- -gGCGCC-GAGCGcCccUCGUCGCGu -3'
miRNA:   3'- gaCGCGGaCUCGCaGuuAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 25829 0.66 0.533525
Target:  5'- -gGCgGCCUGGGCGguggccugcUCGGUgGCgGCAAg -3'
miRNA:   3'- gaCG-CGGACUCGC---------AGUUAgCGgCGUU- -5'
12772 3' -57.5 NC_003387.1 + 48707 0.66 0.522857
Target:  5'- -cGCGCUUG-GCGuugUCGAgcaccgugCGCCGCGAc -3'
miRNA:   3'- gaCGCGGACuCGC---AGUUa-------GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 51440 0.66 0.522857
Target:  5'- aCUGCGCCg----GUCGAaCGCCGCGc -3'
miRNA:   3'- -GACGCGGacucgCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 42916 0.66 0.522857
Target:  5'- -cGCaGCCUGcAGCGcCGGUCGCuCGaCAAc -3'
miRNA:   3'- gaCG-CGGAC-UCGCaGUUAGCG-GC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 29877 0.66 0.522857
Target:  5'- gUGCGCCuUGcGCGcCGAUCGCguuggcgauCGCGAg -3'
miRNA:   3'- gACGCGG-ACuCGCaGUUAGCG---------GCGUU- -5'
12772 3' -57.5 NC_003387.1 + 17179 0.66 0.512271
Target:  5'- -cGcCGCCUGGGCGgCGA-CGgCGCGAa -3'
miRNA:   3'- gaC-GCGGACUCGCaGUUaGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 28945 0.66 0.512271
Target:  5'- --aCGCCUGAGUGUCGuguagcuaacCGCCGgCAAa -3'
miRNA:   3'- gacGCGGACUCGCAGUua--------GCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 4558 0.66 0.512271
Target:  5'- cCUGCGCCUGcGCGaccgcgcgggccUCGGUggcgCGCUGCGc -3'
miRNA:   3'- -GACGCGGACuCGC------------AGUUA----GCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 19338 0.66 0.512271
Target:  5'- aUGUGCCUGcggcGGCGUCccaucCGcCCGCGAu -3'
miRNA:   3'- gACGCGGAC----UCGCAGuua--GC-GGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.