miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 37794 0.66 0.501775
Target:  5'- aUGCGCCgcuGCGcCGGUaGCCGCGc -3'
miRNA:   3'- gACGCGGacuCGCaGUUAgCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 24623 0.66 0.498645
Target:  5'- -cGCGCCUGGGCGacccgacgcaccUCGcccugcugcgcgagGUCGCCaGCGc -3'
miRNA:   3'- gaCGCGGACUCGC------------AGU--------------UAGCGG-CGUu -5'
12772 3' -57.5 NC_003387.1 + 698 0.67 0.491375
Target:  5'- -cGCGCCa---CGUCAuugCGCCGCAAg -3'
miRNA:   3'- gaCGCGGacucGCAGUua-GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 50706 0.67 0.491375
Target:  5'- aUGCGCCUGGGCGcgCAcaagGUCGa-GCGu -3'
miRNA:   3'- gACGCGGACUCGCa-GU----UAGCggCGUu -5'
12772 3' -57.5 NC_003387.1 + 37285 0.67 0.491375
Target:  5'- -gGCGCCUGGcGCGcUCG-UCGgCGCGGu -3'
miRNA:   3'- gaCGCGGACU-CGC-AGUuAGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 43683 0.67 0.481075
Target:  5'- -cGCGauCCUG-GCGUgGAUCGCCGaCGg -3'
miRNA:   3'- gaCGC--GGACuCGCAgUUAGCGGC-GUu -5'
12772 3' -57.5 NC_003387.1 + 27330 0.67 0.481075
Target:  5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3'
miRNA:   3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 35802 0.67 0.470882
Target:  5'- gCUGUGCCUcGGCG-CcGUCGgCGCGAu -3'
miRNA:   3'- -GACGCGGAcUCGCaGuUAGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 24517 0.67 0.460799
Target:  5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3'
miRNA:   3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 11686 0.67 0.460799
Target:  5'- --uCGCgUGGGUGUCAauGUCGCCGuCGAc -3'
miRNA:   3'- gacGCGgACUCGCAGU--UAGCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 335 0.67 0.450832
Target:  5'- ---gGCCUGGuaGUCGAuuggcUCGCCGCAAa -3'
miRNA:   3'- gacgCGGACUcgCAGUU-----AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 5844 0.68 0.440984
Target:  5'- gCUGCGCCgcaGGUGgggg-CGCCGCAAc -3'
miRNA:   3'- -GACGCGGac-UCGCaguuaGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 47825 0.68 0.440984
Target:  5'- uUGCGUUUGAGCauguagccGUUcGUCGCCGCc- -3'
miRNA:   3'- gACGCGGACUCG--------CAGuUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 29005 0.68 0.431259
Target:  5'- cCUGCGCC-GAGuCGU---UCGCCGCc- -3'
miRNA:   3'- -GACGCGGaCUC-GCAguuAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 41668 0.68 0.402858
Target:  5'- aCUGCGaCCUGugguucGGCGUCAacccgacccggcGUCGCgGCGc -3'
miRNA:   3'- -GACGC-GGAC------UCGCAGU------------UAGCGgCGUu -5'
12772 3' -57.5 NC_003387.1 + 50120 0.68 0.393658
Target:  5'- -aGCGCCUG-GUcaCGAUCGCCGUu- -3'
miRNA:   3'- gaCGCGGACuCGcaGUUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 24865 0.69 0.366888
Target:  5'- -cGCGCC--GGUGUCGAUCGUgGCGc -3'
miRNA:   3'- gaCGCGGacUCGCAGUUAGCGgCGUu -5'
12772 3' -57.5 NC_003387.1 + 30124 0.69 0.358248
Target:  5'- -aGgGCCUGAGCuUCGaccGUgGCCGCAc -3'
miRNA:   3'- gaCgCGGACUCGcAGU---UAgCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 49494 0.69 0.358248
Target:  5'- gUGCGCCcGcccGGCGUCGAcgUGUCGCAAu -3'
miRNA:   3'- gACGCGGaC---UCGCAGUUa-GCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 42039 0.69 0.349751
Target:  5'- -aGCGCCaGGGCGcCAagAUCGaCCGCGg -3'
miRNA:   3'- gaCGCGGaCUCGCaGU--UAGC-GGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.