miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 43156 0.68 0.489473
Target:  5'- aCAGGuGCG-CG-UGCUGGCGAAUCCAc -3'
miRNA:   3'- aGUCC-UGCaGCuGUGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 935 0.68 0.498571
Target:  5'- cUCGGGGCGaUCGACGCCcagccaccagucgGGCGggUa-- -3'
miRNA:   3'- -AGUCCUGC-AGCUGUGG-------------CCGCuuGggu -5'
12774 3' -57.4 NC_003387.1 + 48878 0.68 0.499587
Target:  5'- --cGGAuCGUCGGCGCCGccuaccGCGcGCCCu -3'
miRNA:   3'- aguCCU-GCAGCUGUGGC------CGCuUGGGu -5'
12774 3' -57.4 NC_003387.1 + 1320 0.68 0.499587
Target:  5'- gCAGGcgcuCGcCGGuCACCGGCcGAAUCCGa -3'
miRNA:   3'- aGUCCu---GCaGCU-GUGGCCG-CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 44390 0.68 0.499587
Target:  5'- gUCGGGGuCGUCGAgGUCGGCcGGGCCg- -3'
miRNA:   3'- -AGUCCU-GCAGCUgUGGCCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 10791 0.68 0.499587
Target:  5'- gUCGGGuCGUCGGCGUCGGCGGcACaCGg -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGCCGCU-UGgGU- -5'
12774 3' -57.4 NC_003387.1 + 19439 0.68 0.509792
Target:  5'- aCAGGGCGUUaAgGCCGuGCGGGCgCGu -3'
miRNA:   3'- aGUCCUGCAGcUgUGGC-CGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 4410 0.67 0.520084
Target:  5'- gCAGaACGUCGACGCCgagcugGGCaaggcguucgccGAGCCCGc -3'
miRNA:   3'- aGUCcUGCAGCUGUGG------CCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27192 0.67 0.529416
Target:  5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3'
miRNA:   3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5'
12774 3' -57.4 NC_003387.1 + 11374 0.67 0.530457
Target:  5'- cCGGGuCGUCGuUugCGGCGAucgGCgCCAc -3'
miRNA:   3'- aGUCCuGCAGCuGugGCCGCU---UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 34467 0.67 0.530457
Target:  5'- --uGGAuCGUCGACAUggCGGCGGAUgCGg -3'
miRNA:   3'- aguCCU-GCAGCUGUG--GCCGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 8092 0.67 0.530457
Target:  5'- ------gGUCGGCGCCaacccgcccgagGGCGAGCCCAg -3'
miRNA:   3'- aguccugCAGCUGUGG------------CCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 39127 0.67 0.537762
Target:  5'- gCGGGGCugccaGACugCGGCGAccagccgacguccuGCCCGu -3'
miRNA:   3'- aGUCCUGcag--CUGugGCCGCU--------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 23042 0.67 0.539855
Target:  5'- cUCGGccacgucGACGUCGACGUCGGCGAGgCg- -3'
miRNA:   3'- -AGUC-------CUGCAGCUGUGGCCGCUUgGgu -5'
12774 3' -57.4 NC_003387.1 + 10333 0.67 0.540904
Target:  5'- aUCAGccgcGGCGUCGAUA-CGGCcGACCCc -3'
miRNA:   3'- -AGUC----CUGCAGCUGUgGCCGcUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 14190 0.67 0.551418
Target:  5'- -gAGGGCGUCGugAUggCGcGCGAGCUUg -3'
miRNA:   3'- agUCCUGCAGCugUG--GC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 24745 0.67 0.561995
Target:  5'- -gAGGGCGccgcaaCGGCACCGGCcAAgCCGa -3'
miRNA:   3'- agUCCUGCa-----GCUGUGGCCGcUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 45160 0.67 0.561995
Target:  5'- -gAGGugGUCGcgugagcagGCACCGGCaaGAggaucggguguuGCCCGg -3'
miRNA:   3'- agUCCugCAGC---------UGUGGCCG--CU------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 30129 0.67 0.561995
Target:  5'- --uGGGCGaguaGACGauGGCGAACCCGc -3'
miRNA:   3'- aguCCUGCag--CUGUggCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 1484 0.67 0.572625
Target:  5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3'
miRNA:   3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.