miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 19144 0.66 0.594019
Target:  5'- cCGGGcgguggcuCGUCGACGCUgucgagGGCGcGGCCCGc -3'
miRNA:   3'- aGUCCu-------GCAGCUGUGG------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 19439 0.68 0.509792
Target:  5'- aCAGGGCGUUaAgGCCGuGCGGGCgCGu -3'
miRNA:   3'- aGUCCUGCAGcUgUGGC-CGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 19476 0.67 0.576891
Target:  5'- gCAGGACGUCGucgagcacguACgucuugacggccaucGCCGaGCGGGCCUc -3'
miRNA:   3'- aGUCCUGCAGC----------UG---------------UGGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 21580 0.66 0.604767
Target:  5'- cCAGGcGCG-CGGCAUCaGCGAGgCCGa -3'
miRNA:   3'- aGUCC-UGCaGCUGUGGcCGCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 21842 0.66 0.615537
Target:  5'- gCAGcG-UGUgGACACCGGCGcACCa- -3'
miRNA:   3'- aGUC-CuGCAgCUGUGGCCGCuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 22329 0.68 0.487461
Target:  5'- aUCAGGuaacucuccCGGCGCCGGUGGggcugGCCCAg -3'
miRNA:   3'- -AGUCCugca-----GCUGUGGCCGCU-----UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 22670 0.69 0.444264
Target:  5'- gUCAGGGCGcgcucgugggcggugUCGACGgCGGCGcuggcGGCCUg -3'
miRNA:   3'- -AGUCCUGC---------------AGCUGUgGCCGC-----UUGGGu -5'
12774 3' -57.4 NC_003387.1 + 23042 0.67 0.539855
Target:  5'- cUCGGccacgucGACGUCGACGUCGGCGAGgCg- -3'
miRNA:   3'- -AGUC-------CUGCAGCUGUGGCCGCUUgGgu -5'
12774 3' -57.4 NC_003387.1 + 23445 0.7 0.359761
Target:  5'- aCAGGGCGUCGAUGCgGGUu-GCCa- -3'
miRNA:   3'- aGUCCUGCAGCUGUGgCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 23843 0.66 0.63711
Target:  5'- cCGGGAC-UCGGCGCCGugccgcucGCGGuaccaguccgACCCGc -3'
miRNA:   3'- aGUCCUGcAGCUGUGGC--------CGCU----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 23860 0.68 0.459729
Target:  5'- gUCGGGGC--CGugGaCCGGCG-ACCCGg -3'
miRNA:   3'- -AGUCCUGcaGCugU-GGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 24122 0.72 0.275994
Target:  5'- --cGGGCGUCGGCAgcuaucCCGGCcuGCCCGa -3'
miRNA:   3'- aguCCUGCAGCUGU------GGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 24154 0.71 0.325025
Target:  5'- -gAGGGCGUCGuCGaCGGCGAucgccgccucggucGCCCAa -3'
miRNA:   3'- agUCCUGCAGCuGUgGCCGCU--------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 24745 0.67 0.561995
Target:  5'- -gAGGGCGccgcaaCGGCACCGGCcAAgCCGa -3'
miRNA:   3'- agUCCUGCa-----GCUGUGGCCGcUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 25298 0.72 0.275994
Target:  5'- cCAGGgcgACGUCGGCG-CGGUGGugCCAg -3'
miRNA:   3'- aGUCC---UGCAGCUGUgGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25754 0.72 0.275994
Target:  5'- cUCGGcauGAUGuUCGGCACCGGC-AACCCGc -3'
miRNA:   3'- -AGUC---CUGC-AGCUGUGGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 26330 0.66 0.582233
Target:  5'- aUCAGcauugcgguagccGACGUCaGCACCGGauaGAACCa- -3'
miRNA:   3'- -AGUC-------------CUGCAGcUGUGGCCg--CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 27192 0.67 0.529416
Target:  5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3'
miRNA:   3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.