miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 25268 0.71 0.254642
Target:  5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3'
miRNA:   3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3734 0.71 0.256512
Target:  5'- gACCCGuaccugucgGCGUCGUCcaagcugacgacgcaGugGUacgccgagcagccCGCCCGCCa -3'
miRNA:   3'- -UGGGC---------UGCAGCAG---------------CugCA-------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49501 0.71 0.260921
Target:  5'- cGCCCGGCGUCGacgugUCgcaauggggcugGACGUCGCa-GCCc -3'
miRNA:   3'- -UGGGCUGCAGC-----AG------------CUGCAGCGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 23329 0.71 0.260921
Target:  5'- cGCCCGGCGggCGagaUCGAgGUCGUCaccggCGCCg -3'
miRNA:   3'- -UGGGCUGCa-GC---AGCUgCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 5980 0.71 0.267326
Target:  5'- gACCCGGCcgGUUGcCGcCGugcaucguccacUCGCCCGCCu -3'
miRNA:   3'- -UGGGCUG--CAGCaGCuGC------------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 38150 0.7 0.273857
Target:  5'- cGCuuGGCGUagaaCGgccaggCGGCGUCGaCCGCCa -3'
miRNA:   3'- -UGggCUGCA----GCa-----GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18373 0.7 0.273857
Target:  5'- gACCuCGACcaCGUCGACGUCGaUCgGCUg -3'
miRNA:   3'- -UGG-GCUGcaGCAGCUGCAGC-GGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 51217 0.7 0.276506
Target:  5'- aGCCUGcACGUCGgccgcggccuggugcUCGACGUCGa-CGCCc -3'
miRNA:   3'- -UGGGC-UGCAGC---------------AGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 45036 0.7 0.278505
Target:  5'- aGCCCGGCGUgaacccgaacgggcCGagguuguaguccUCGACGUCGCCgUGCa -3'
miRNA:   3'- -UGGGCUGCA--------------GC------------AGCUGCAGCGG-GCGg -5'
12775 3' -60.3 NC_003387.1 + 3482 0.7 0.280516
Target:  5'- cCCCGGCGUCGagcaGcCGcUCGgCCGCCu -3'
miRNA:   3'- uGGGCUGCAGCag--CuGC-AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 20240 0.7 0.280516
Target:  5'- cACCaCGGCGcCGgggUCGACGcaaaCGCCCGCa -3'
miRNA:   3'- -UGG-GCUGCaGC---AGCUGCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 29384 0.7 0.280516
Target:  5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3'
miRNA:   3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49878 0.7 0.287303
Target:  5'- -aCCGACGaucaugUCGUCGGCGUgCGgCCGUUg -3'
miRNA:   3'- ugGGCUGC------AGCAGCUGCA-GCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 50375 0.7 0.287303
Target:  5'- cGCUCGACGcCGaCGGCGgccUCGacaCCGCCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCUGC---AGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 41555 0.7 0.287303
Target:  5'- uGCUCGACcacaGUCGUC-ACGUUGCCCauaggcGCCu -3'
miRNA:   3'- -UGGGCUG----CAGCAGcUGCAGCGGG------CGG- -5'
12775 3' -60.3 NC_003387.1 + 39046 0.7 0.287303
Target:  5'- aACgCCGACauagCGUCGACGgCGCCCucggcgaccgaGCCg -3'
miRNA:   3'- -UG-GGCUGca--GCAGCUGCaGCGGG-----------CGG- -5'
12775 3' -60.3 NC_003387.1 + 34117 0.7 0.287303
Target:  5'- -aUCGGCGgCGUCGACGUCGCggugCGCg -3'
miRNA:   3'- ugGGCUGCaGCAGCUGCAGCGg---GCGg -5'
12775 3' -60.3 NC_003387.1 + 18206 0.7 0.293521
Target:  5'- cGCCuCGGCGaCG-CGACGaccggcgaccuggUCGCCCGCg -3'
miRNA:   3'- -UGG-GCUGCaGCaGCUGC-------------AGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 11343 0.7 0.294218
Target:  5'- cGCCCGGCGcUCGgccucacgcUCGGCGUCgGCCUuGCa -3'
miRNA:   3'- -UGGGCUGC-AGC---------AGCUGCAG-CGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 42928 0.7 0.294218
Target:  5'- gACCCGuCGUCGaaaGCG-CGaCCCGCCa -3'
miRNA:   3'- -UGGGCuGCAGCagcUGCaGC-GGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.