miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 51728 0.69 0.537405
Target:  5'- --aGCGCAUCcgaccCCGgucGAGCGCCUCGg -3'
miRNA:   3'- cucCGCGUAGu----GGCa--CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 42011 0.69 0.537405
Target:  5'- uGGGGcCGCcUgGCCGUGAugguCGCCgagCGCc -3'
miRNA:   3'- -CUCC-GCGuAgUGGCACUu---GUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 36087 0.69 0.548161
Target:  5'- cGAGGCGCA-CGCCGagugcaUGAGCAUgUC-Cg -3'
miRNA:   3'- -CUCCGCGUaGUGGC------ACUUGUGgAGcG- -5'
12775 5' -55.1 NC_003387.1 + 4525 0.69 0.548161
Target:  5'- -cGGcCGCcgcCGCCGgugcGGGCACCUUGCg -3'
miRNA:   3'- cuCC-GCGua-GUGGCa---CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 50557 0.69 0.548161
Target:  5'- gGGGGCGC-UUugUGUuGACACCUCa- -3'
miRNA:   3'- -CUCCGCGuAGugGCAcUUGUGGAGcg -5'
12775 5' -55.1 NC_003387.1 + 41788 0.69 0.548161
Target:  5'- cGGGCGCGU-GCCGcGAccuggcgcACGCCUgGCa -3'
miRNA:   3'- cUCCGCGUAgUGGCaCU--------UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 9691 0.68 0.557898
Target:  5'- cGAGGCGUGggGCCGUGAcggcggGCugaucgagggaaaAUCUCGCa -3'
miRNA:   3'- -CUCCGCGUagUGGCACU------UG-------------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44089 0.68 0.569865
Target:  5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3'
miRNA:   3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 5184 0.68 0.580797
Target:  5'- cGGGGCaggGCAUCaaggcccgGCUGUG-GCGCCUCGg -3'
miRNA:   3'- -CUCCG---CGUAG--------UGGCACuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 49093 0.68 0.580797
Target:  5'- cAGGCGUA-CGaaGUcGAGCACCUCGa -3'
miRNA:   3'- cUCCGCGUaGUggCA-CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 30976 0.68 0.580797
Target:  5'- -uGGCGCugaCGCC--GAGCGCCUCGg -3'
miRNA:   3'- cuCCGCGua-GUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44421 0.68 0.580797
Target:  5'- uGAuGCGCcgCGCCgGUGAuccACACgUCGCc -3'
miRNA:   3'- -CUcCGCGuaGUGG-CACU---UGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 38072 0.68 0.585183
Target:  5'- cGAGcGcCGCGUCACUGUGcgcggcggccugacgGGCACCU-GCg -3'
miRNA:   3'- -CUC-C-GCGUAGUGGCAC---------------UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 43691 0.68 0.591773
Target:  5'- -uGGCGUggAUCGCCGacGGCGCC-CGCc -3'
miRNA:   3'- cuCCGCG--UAGUGGCacUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 35852 0.68 0.60168
Target:  5'- --cGUGCAUCGCC-UGGGCGugcggcgccaucuCCUCGCg -3'
miRNA:   3'- cucCGCGUAGUGGcACUUGU-------------GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 37162 0.68 0.60168
Target:  5'- cGGGCGCAuggUCACCGagcUGGcggcccgGCACCccgagCGCg -3'
miRNA:   3'- cUCCGCGU---AGUGGC---ACU-------UGUGGa----GCG- -5'
12775 5' -55.1 NC_003387.1 + 6211 0.68 0.602783
Target:  5'- -uGGUGCAgUCGCCGagcgagcugcgGAACACCugaacUCGCa -3'
miRNA:   3'- cuCCGCGU-AGUGGCa----------CUUGUGG-----AGCG- -5'
12775 5' -55.1 NC_003387.1 + 36162 0.68 0.602783
Target:  5'- cGuuGCGCAccugCACCuUGAACGCCUgGUa -3'
miRNA:   3'- -CucCGCGUa---GUGGcACUUGUGGAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.