miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 5' -54.7 NC_003387.1 + 14170 0.67 0.681456
Target:  5'- aCGUCAugGUGcgcuugcUCuGCGccaccaUGACGCCGUc -3'
miRNA:   3'- -GCAGUugCAC-------AGcCGCa-----ACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 9337 0.68 0.67167
Target:  5'- gGUCGACGUcGUCGaGCaccagGACGUCGa -3'
miRNA:   3'- gCAGUUGCA-CAGC-CGcaa--CUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36901 0.68 0.660762
Target:  5'- gCGUCGGCGUcacaacCGGCGgcGACGCgGc -3'
miRNA:   3'- -GCAGUUGCAca----GCCGCaaCUGCGgCa -5'
12777 5' -54.7 NC_003387.1 + 44028 0.68 0.649828
Target:  5'- uCGUCGACGUcgGUCGGCagcGGCguGCCGa -3'
miRNA:   3'- -GCAGUUGCA--CAGCCGcaaCUG--CGGCa -5'
12777 5' -54.7 NC_003387.1 + 27958 0.68 0.638877
Target:  5'- gCGcUCGGCGUGcUCGGC-UUGGCcgguGCCGUu -3'
miRNA:   3'- -GC-AGUUGCAC-AGCCGcAACUG----CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 48052 0.68 0.638877
Target:  5'- uCGUCuugcuuGGCGgcGUCGGCcgcUUGGCGCCGg -3'
miRNA:   3'- -GCAG------UUGCa-CAGCCGc--AACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 23037 0.68 0.637782
Target:  5'- -uUCAACGUGccCGGCGgcgUGccgaucacgcacuACGCCGUg -3'
miRNA:   3'- gcAGUUGCACa-GCCGCa--AC-------------UGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 23049 0.68 0.616968
Target:  5'- aCGUCGACGUcgacGUCGGCGa-GGCGuUCGa -3'
miRNA:   3'- -GCAGUUGCA----CAGCCGCaaCUGC-GGCa -5'
12777 5' -54.7 NC_003387.1 + 12935 0.69 0.599475
Target:  5'- uCGUCGGCGcucggcagugccacGUCGGCGUcUGGCgGCUGUa -3'
miRNA:   3'- -GCAGUUGCa-------------CAGCCGCA-ACUG-CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 43220 0.69 0.595111
Target:  5'- gGUCGugccGUCGGgguacuCGUUGACGCCGUa -3'
miRNA:   3'- gCAGUugcaCAGCC------GCAACUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 10012 0.69 0.595111
Target:  5'- gGUCGGCGUugccgguaucgGUCGGCG-UGACGUUa- -3'
miRNA:   3'- gCAGUUGCA-----------CAGCCGCaACUGCGGca -5'
12777 5' -54.7 NC_003387.1 + 38448 0.69 0.584225
Target:  5'- aGUCGACGcGcUCGGgcUUGGCGCCGa -3'
miRNA:   3'- gCAGUUGCaC-AGCCgcAACUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 27022 0.69 0.573378
Target:  5'- aCGUCA---UGUCGGCGUUGGCcuucucGUCGUu -3'
miRNA:   3'- -GCAGUugcACAGCCGCAACUG------CGGCA- -5'
12777 5' -54.7 NC_003387.1 + 19444 0.69 0.561502
Target:  5'- gCGUUAaggccgugcgggcGCGUGUCaGUGUgGGCGCCGa -3'
miRNA:   3'- -GCAGU-------------UGCACAGcCGCAaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 47454 0.7 0.541155
Target:  5'- aCGUuuaCGGCGaGUCGGCuGUUGAguuCGCCGUc -3'
miRNA:   3'- -GCA---GUUGCaCAGCCG-CAACU---GCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 13649 0.7 0.541155
Target:  5'- cCGUCGGCGgcggcucgGUCGcCGagGGCGCCGUc -3'
miRNA:   3'- -GCAGUUGCa-------CAGCcGCaaCUGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 27517 0.7 0.530545
Target:  5'- aCGUCAgcaccaugauGCGcUGccgCGGCGgcGGCGCCGg -3'
miRNA:   3'- -GCAGU----------UGC-ACa--GCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 16713 0.7 0.509561
Target:  5'- aCGuUCGAccuCGUGaUCGGCGacGACGCCGa -3'
miRNA:   3'- -GC-AGUU---GCAC-AGCCGCaaCUGCGGCa -5'
12777 5' -54.7 NC_003387.1 + 36134 0.7 0.509561
Target:  5'- uCGUaguaaAGCGUccCGGCGUUGcCGCCGUu -3'
miRNA:   3'- -GCAg----UUGCAcaGCCGCAACuGCGGCA- -5'
12777 5' -54.7 NC_003387.1 + 22976 0.7 0.4992
Target:  5'- gGUCAuCGUGUCGGgc--GGCGCCGa -3'
miRNA:   3'- gCAGUuGCACAGCCgcaaCUGCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.