Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 470 | 0.68 | 0.590344 |
Target: 5'- gGCGCGGC-GUUGCcgucagUCUCGacuggugcuguUGACUCGUc -3' miRNA: 3'- -CGCGUCGuCAACG------AGGGU-----------ACUGAGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 4634 | 0.68 | 0.590344 |
Target: 5'- gGCGCAGCGGcaGCgccaCCCGUcGAggCGCu -3' miRNA: 3'- -CGCGUCGUCaaCGa---GGGUA-CUgaGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 19601 | 0.68 | 0.590344 |
Target: 5'- cGUGUGGCAGUcGUUCCU-UGACgcCGCg -3' miRNA: 3'- -CGCGUCGUCAaCGAGGGuACUGa-GCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 44276 | 0.69 | 0.52479 |
Target: 5'- cGCGCcgcGCGGUgGCUCgCCGUGucuCUCGa -3' miRNA: 3'- -CGCGu--CGUCAaCGAG-GGUACu--GAGCg -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 48096 | 0.7 | 0.493035 |
Target: 5'- gGCGCuGCcGcUGCgCCCGcggUGGCUCGCc -3' miRNA: 3'- -CGCGuCGuCaACGaGGGU---ACUGAGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 369 | 0.7 | 0.482645 |
Target: 5'- uGCGCgAGCGGUUccGCgCCCAucucgucgagUGcACUCGCa -3' miRNA: 3'- -CGCG-UCGUCAA--CGaGGGU----------AC-UGAGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 28085 | 0.72 | 0.376326 |
Target: 5'- cGCGCAGCAGggcgaggUGCgucgggucgCCCA-GGCgCGCa -3' miRNA: 3'- -CGCGUCGUCa------ACGa--------GGGUaCUGaGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 49056 | 0.73 | 0.358759 |
Target: 5'- uGCGCuGCuGgcGCUCaCCGggcaGGCUCGCg -3' miRNA: 3'- -CGCGuCGuCaaCGAG-GGUa---CUGAGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 4373 | 0.73 | 0.325376 |
Target: 5'- cGCGCucGGCGGccaggUGCUCCUGauACUCGCg -3' miRNA: 3'- -CGCG--UCGUCa----ACGAGGGUacUGAGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 45190 | 0.74 | 0.297353 |
Target: 5'- gGCgGCAGCAGUgccGCUCUCGUucacccucggccgcaGACUCGUc -3' miRNA: 3'- -CG-CGUCGUCAa--CGAGGGUA---------------CUGAGCG- -5' |
|||||||
12781 | 3' | -54.5 | NC_003387.1 | + | 49478 | 1.13 | 0.000581 |
Target: 5'- gGCGCAGCAGUUGCUCCCAUGACUCGCc -3' miRNA: 3'- -CGCGUCGUCAACGAGGGUACUGAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home