miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 25182 0.67 0.697171
Target:  5'- gGCGGuCAgcGAGGcucauacaggcaaccUCGCGGCggcgGCCGGAUCu -3'
miRNA:   3'- -CGCU-GUa-CUUC---------------AGUGCCG----CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 48620 0.67 0.692819
Target:  5'- cCGACuu---GUaCACGGCGCCgcGGGUCg -3'
miRNA:   3'- cGCUGuacuuCA-GUGCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 1516 0.67 0.692819
Target:  5'- cCGACGUGcAGGcUCAgcaccuCGGUGCCgaGGAUCg -3'
miRNA:   3'- cGCUGUAC-UUC-AGU------GCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 52527 0.67 0.692819
Target:  5'- cGCGGCAau--GUCGCGG-GCCGaGUCg -3'
miRNA:   3'- -CGCUGUacuuCAGUGCCgCGGCcUAG- -5'
12783 5' -54.6 NC_003387.1 + 30245 0.67 0.681901
Target:  5'- uUGGCcgGGucGUCGggguCGGCGCCgGGGUCg -3'
miRNA:   3'- cGCUGuaCUu-CAGU----GCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 34120 0.67 0.670934
Target:  5'- gGCGGCGUcGAcGUCGCGGUGCgCGa--- -3'
miRNA:   3'- -CGCUGUA-CUuCAGUGCCGCG-GCcuag -5'
12783 5' -54.6 NC_003387.1 + 48827 0.67 0.670934
Target:  5'- gGCGGuCA--GGGUCgggcaGCGGCGCCGGuUCc -3'
miRNA:   3'- -CGCU-GUacUUCAG-----UGCCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 8172 0.67 0.670934
Target:  5'- -aGAagcccuUGAAGUCuuucgagcccuGCGGCGCCGGGc- -3'
miRNA:   3'- cgCUgu----ACUUCAG-----------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 50221 0.71 0.466406
Target:  5'- cGCGuCAccUGGAcUUACGGCGCCuaccGGAUCg -3'
miRNA:   3'- -CGCuGU--ACUUcAGUGCCGCGG----CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 4055 0.71 0.476529
Target:  5'- uGCGAUAcGccucGGUCACGGCGUgCGGGUUc -3'
miRNA:   3'- -CGCUGUaCu---UCAGUGCCGCG-GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 15455 0.69 0.539345
Target:  5'- uGCG-CGUGAAG-CGCGGCGa-GGAUg -3'
miRNA:   3'- -CGCuGUACUUCaGUGCCGCggCCUAg -5'
12783 5' -54.6 NC_003387.1 + 43117 0.69 0.571815
Target:  5'- cGCGACGg-----CGCGGCGCCGcGGUg -3'
miRNA:   3'- -CGCUGUacuucaGUGCCGCGGC-CUAg -5'
12783 5' -54.6 NC_003387.1 + 33467 0.69 0.582748
Target:  5'- gGCGGCc-GAAGUCGCcgaggcggucGGCGCCcGcGAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG----------CCGCGG-C-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 14679 0.71 0.42612
Target:  5'- cGCGGCAcgugGGAGUCGuggccgaaguuccUGGUGCgCGGGUCu -3'
miRNA:   3'- -CGCUGUa---CUUCAGU-------------GCCGCG-GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 22920 0.72 0.389785
Target:  5'- cGCGACc-GAAauuaGCGGCGCCGGAUa -3'
miRNA:   3'- -CGCUGuaCUUcag-UGCCGCGGCCUAg -5'
12783 5' -54.6 NC_003387.1 + 41694 0.72 0.389785
Target:  5'- cCGACccGgcGUCGCGGCGCCGa--- -3'
miRNA:   3'- cGCUGuaCuuCAGUGCCGCGGCcuag -5'
12783 5' -54.6 NC_003387.1 + 3574 0.72 0.3808
Target:  5'- gGCGGCGUGAauGGUaacgGCGGCGCCuGAg- -3'
miRNA:   3'- -CGCUGUACU--UCAg---UGCCGCGGcCUag -5'
12783 5' -54.6 NC_003387.1 + 3989 0.73 0.354688
Target:  5'- cGCGGguCAUGGAcucGUCGCGGCGCaCGGugcUCg -3'
miRNA:   3'- -CGCU--GUACUU---CAGUGCCGCG-GCCu--AG- -5'
12783 5' -54.6 NC_003387.1 + 29364 0.74 0.321879
Target:  5'- gGCGACcUGAccGUCAgCGGCGCCGGu-- -3'
miRNA:   3'- -CGCUGuACUu-CAGU-GCCGCGGCCuag -5'
12783 5' -54.6 NC_003387.1 + 7824 0.66 0.766956
Target:  5'- gGCGGCc-GAGGUCGCccGGCGCgcaggCGGaAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG--CCGCG-----GCC-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.