miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 48827 0.67 0.670934
Target:  5'- gGCGGuCA--GGGUCgggcaGCGGCGCCGGuUCc -3'
miRNA:   3'- -CGCU-GUacUUCAG-----UGCCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 8172 0.67 0.670934
Target:  5'- -aGAagcccuUGAAGUCuuucgagcccuGCGGCGCCGGGc- -3'
miRNA:   3'- cgCUgu----ACUUCAG-----------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 34120 0.67 0.670934
Target:  5'- gGCGGCGUcGAcGUCGCGGUGCgCGa--- -3'
miRNA:   3'- -CGCUGUA-CUuCAGUGCCGCG-GCcuag -5'
12783 5' -54.6 NC_003387.1 + 22179 0.67 0.667636
Target:  5'- gGCGGCGguccauGUCGgGGCGCCcguugcacuugucgGGGUCg -3'
miRNA:   3'- -CGCUGUacuu--CAGUgCCGCGG--------------CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 10638 0.67 0.659931
Target:  5'- cGCGGCgGUGAAGggUACGGCGuUCGGccUCg -3'
miRNA:   3'- -CGCUG-UACUUCa-GUGCCGC-GGCCu-AG- -5'
12783 5' -54.6 NC_003387.1 + 28888 0.67 0.659931
Target:  5'- uGCGGCGgcuuAGgCGCgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUacu-UCaGUG-CCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 26559 0.67 0.658829
Target:  5'- aCGACAUGAcGcCcuugcggGCGGUGCCGGGc- -3'
miRNA:   3'- cGCUGUACUuCaG-------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 36361 0.68 0.637856
Target:  5'- cUGAUA-GAGGUUGuccaagcccuCGGCGCCGGGUUg -3'
miRNA:   3'- cGCUGUaCUUCAGU----------GCCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 39631 0.68 0.637856
Target:  5'- gGCGGCAUGAGccucgacccgguGUCGCgcauGGCGUgGGAg- -3'
miRNA:   3'- -CGCUGUACUU------------CAGUG----CCGCGgCCUag -5'
12783 5' -54.6 NC_003387.1 + 11033 0.68 0.615761
Target:  5'- gGCGaACAUGAAggccgcuauGUCGCgguucGGCGCCGaGGUUa -3'
miRNA:   3'- -CGC-UGUACUU---------CAGUG-----CCGCGGC-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 22304 0.68 0.615761
Target:  5'- cCGGCA---AGcCGCcugguGGCGCCGGAUCa -3'
miRNA:   3'- cGCUGUacuUCaGUG-----CCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 43222 0.68 0.615761
Target:  5'- gGCGAgGUGAcgcaccacguGUUGCcguuccuguucGGCGCCGGGUCc -3'
miRNA:   3'- -CGCUgUACUu---------CAGUG-----------CCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 28358 0.68 0.615761
Target:  5'- cGCGAaagAUGuucauGUCgAUGGCGCCuGGAUCc -3'
miRNA:   3'- -CGCUg--UACuu---CAG-UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 31470 0.68 0.604729
Target:  5'- cCGACuccucGUCGCGGCGCaccaugccgacCGGAUCg -3'
miRNA:   3'- cGCUGuacuuCAGUGCCGCG-----------GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 23815 0.68 0.604729
Target:  5'- cGCGcagcagauACGUGAGGgCGCcGCGCCGGGacUCg -3'
miRNA:   3'- -CGC--------UGUACUUCaGUGcCGCGGCCU--AG- -5'
12783 5' -54.6 NC_003387.1 + 8294 0.69 0.593723
Target:  5'- gGCGACGUGuGGaUCAcCGGCG-CGGcgCa -3'
miRNA:   3'- -CGCUGUACuUC-AGU-GCCGCgGCCuaG- -5'
12783 5' -54.6 NC_003387.1 + 45132 0.69 0.593723
Target:  5'- gGUGACGcauuucGAGG-CGCGGCGCuCGGAg- -3'
miRNA:   3'- -CGCUGUa-----CUUCaGUGCCGCG-GCCUag -5'
12783 5' -54.6 NC_003387.1 + 33467 0.69 0.582748
Target:  5'- gGCGGCc-GAAGUCGCcgaggcggucGGCGCCcGcGAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG----------CCGCGG-C-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 43117 0.69 0.571815
Target:  5'- cGCGACGg-----CGCGGCGCCGcGGUg -3'
miRNA:   3'- -CGCUGUacuucaGUGCCGCGGC-CUAg -5'
12783 5' -54.6 NC_003387.1 + 10962 0.69 0.571815
Target:  5'- uUGACGUcGAGGUCgcacacaccGCGGCcaGCCGGGUg -3'
miRNA:   3'- cGCUGUA-CUUCAG---------UGCCG--CGGCCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.