miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 47694 1.11 0.000152
Target:  5'- aCUCGCGCAGCGCCGCCCUCGUGAGCCu -3'
miRNA:   3'- -GAGCGCGUCGCGGCGGGAGCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 42949 0.81 0.02818
Target:  5'- gUCGCGCucgccaAGUGCCGCCCcggcaugcgCGUGAGCCu -3'
miRNA:   3'- gAGCGCG------UCGCGGCGGGa--------GCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 4400 0.76 0.074862
Target:  5'- aCUCGCGCucgcGCGCCGCCUcgauuUCGUcGAGgCg -3'
miRNA:   3'- -GAGCGCGu---CGCGGCGGG-----AGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 17029 0.76 0.070849
Target:  5'- -cCGCgGCGGCuGCCGCCCUCGccGGGCg -3'
miRNA:   3'- gaGCG-CGUCG-CGGCGGGAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 51164 0.76 0.072829
Target:  5'- --gGCGCuuCGCCGUCCUCG-GGGCCg -3'
miRNA:   3'- gagCGCGucGCGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18708 0.75 0.085867
Target:  5'- gUCGCGCAGCGCCagggcgcgGCaCUCGUcGAGCa -3'
miRNA:   3'- gAGCGCGUCGCGG--------CGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 41101 0.74 0.095764
Target:  5'- -cUGCGCGGCggucGCgGCCUUCGUGAuGCCc -3'
miRNA:   3'- gaGCGCGUCG----CGgCGGGAGCACU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 44752 0.74 0.101109
Target:  5'- --aGCGCAGCacGCCGCCCgcCGUGAagcgGCCc -3'
miRNA:   3'- gagCGCGUCG--CGGCGGGa-GCACU----CGG- -5'
12784 3' -62.3 NC_003387.1 + 13039 0.74 0.098403
Target:  5'- -aCGCGCuGCGUCGCCUUCGcgaucgcGAGCUg -3'
miRNA:   3'- gaGCGCGuCGCGGCGGGAGCa------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 48213 0.73 0.109656
Target:  5'- uUCGCGCAGCaGCCGgUCgagCG-GGGCCu -3'
miRNA:   3'- gAGCGCGUCG-CGGCgGGa--GCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 20508 0.73 0.112653
Target:  5'- gCUCGCGCAGCGCggcguCGCgCUCGUcGGUg -3'
miRNA:   3'- -GAGCGCGUCGCG-----GCGgGAGCAcUCGg -5'
12784 3' -62.3 NC_003387.1 + 43123 0.73 0.125419
Target:  5'- --gGCGCGGCGCCGCggUgGUGGGCg -3'
miRNA:   3'- gagCGCGUCGCGGCGggAgCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 8974 0.73 0.112653
Target:  5'- -cUGCGCGGUGCCGCCaacacgCUCGcGGGCUc -3'
miRNA:   3'- gaGCGCGUCGCGGCGG------GAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 17561 0.73 0.125419
Target:  5'- uUCGCGCgucAGC-CCGCCCUCGcUGgugucgugcGGCCa -3'
miRNA:   3'- gAGCGCG---UCGcGGCGGGAGC-AC---------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 45193 0.72 0.147097
Target:  5'- --gGCaGCAGUGCCGCUCUCGUucacccucGGCCg -3'
miRNA:   3'- gagCG-CGUCGCGGCGGGAGCAc-------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 6879 0.72 0.147097
Target:  5'- gCUCGCGCAggaucuccGCGgCGUCgUCGcGGGCCa -3'
miRNA:   3'- -GAGCGCGU--------CGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 8277 0.72 0.135861
Target:  5'- cCUCGCGCAGCGCCucguGCgCgUCGgcGGGCa -3'
miRNA:   3'- -GAGCGCGUCGCGG----CG-GgAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 49141 0.72 0.139147
Target:  5'- aCUCagGCGCcGCcguuaccauucacGCCGCCCUCGUuGAGCg -3'
miRNA:   3'- -GAG--CGCGuCG-------------CGGCGGGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 9624 0.71 0.155052
Target:  5'- gUCGCGCucguacccGGCGCCcgucaCCCUgGUGuGCCa -3'
miRNA:   3'- gAGCGCG--------UCGCGGc----GGGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 27850 0.71 0.172138
Target:  5'- --gGCGCAGCcaCCGCCCgagGUcGAGCCa -3'
miRNA:   3'- gagCGCGUCGc-GGCGGGag-CA-CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.