miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 42949 0.81 0.02818
Target:  5'- gUCGCGCucgccaAGUGCCGCCCcggcaugcgCGUGAGCCu -3'
miRNA:   3'- gAGCGCG------UCGCGGCGGGa--------GCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18309 0.69 0.24571
Target:  5'- -cCGCgGCGGUGgCGCCCggcaacggCGUG-GCCg -3'
miRNA:   3'- gaGCG-CGUCGCgGCGGGa-------GCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 3048 0.68 0.251858
Target:  5'- --gGCGCAGgCGuucCCGCCCgccUCGgucGAGCCg -3'
miRNA:   3'- gagCGCGUC-GC---GGCGGG---AGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 15076 0.66 0.376208
Target:  5'- gUCGUGaCGGCGaCGCUgUUG-GAGCCc -3'
miRNA:   3'- gAGCGC-GUCGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 32618 0.71 0.155052
Target:  5'- gCUCGcCGCgggGGCGCUGaCCCUa-UGAGCCu -3'
miRNA:   3'- -GAGC-GCG---UCGCGGC-GGGAgcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 34511 0.71 0.155052
Target:  5'- -cCGCuGCGGCGCCGCgauCCUCGggcuGCCc -3'
miRNA:   3'- gaGCG-CGUCGCGGCG---GGAGCacu-CGG- -5'
12784 3' -62.3 NC_003387.1 + 33201 0.71 0.167715
Target:  5'- aUCGCGCAGCGCaagcgcgagGCCCgcUCGgcgauGGCCg -3'
miRNA:   3'- gAGCGCGUCGCGg--------CGGG--AGCac---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 141 0.7 0.186037
Target:  5'- cCUCGCGauccGCGCCGCCga-GcUGGGCCu -3'
miRNA:   3'- -GAGCGCgu--CGCGGCGGgagC-ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 26146 0.69 0.216819
Target:  5'- gCUCGCGCGGC-CUGaCCC-CGagGAGUCa -3'
miRNA:   3'- -GAGCGCGUCGcGGC-GGGaGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 48838 0.69 0.24571
Target:  5'- gCUCgGCGCGacgcacggcGUGCaCGCCCUgGUGcgcAGCCg -3'
miRNA:   3'- -GAG-CGCGU---------CGCG-GCGGGAgCAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 27276 0.69 0.233788
Target:  5'- gUCGCGCGaggagaacgccGCacugGCgGCCCUUGaGAGCCg -3'
miRNA:   3'- gAGCGCGU-----------CG----CGgCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 28024 0.7 0.200916
Target:  5'- --aGCGCGGCaaGCCGaUCCUCGgcGAGCUg -3'
miRNA:   3'- gagCGCGUCG--CGGC-GGGAGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 17029 0.76 0.070849
Target:  5'- -cCGCgGCGGCuGCCGCCCUCGccGGGCg -3'
miRNA:   3'- gaGCG-CGUCG-CGGCGGGAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 12411 0.69 0.24571
Target:  5'- aCUC-CGguGCGCCGCUgUgG-GAGCUg -3'
miRNA:   3'- -GAGcGCguCGCGGCGGgAgCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 44752 0.74 0.101109
Target:  5'- --aGCGCAGCacGCCGCCCgcCGUGAagcgGCCc -3'
miRNA:   3'- gagCGCGUCG--CGGCGGGa-GCACU----CGG- -5'
12784 3' -62.3 NC_003387.1 + 19966 0.7 0.195844
Target:  5'- -cCGCGUcGacuucacaaCGCUGCCCUCG-GGGCCg -3'
miRNA:   3'- gaGCGCGuC---------GCGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30862 0.69 0.24571
Target:  5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3'
miRNA:   3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 45544 0.68 0.251238
Target:  5'- -cCGUGCGGCaaggcgauccGCCGCCagCUCGUcggcacggccgagGAGCCg -3'
miRNA:   3'- gaGCGCGUCG----------CGGCGG--GAGCA-------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 43123 0.73 0.125419
Target:  5'- --gGCGCGGCGCCGCggUgGUGGGCg -3'
miRNA:   3'- gagCGCGUCGCGGCGggAgCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 49180 0.71 0.167278
Target:  5'- gUCGCGCAgGCgGCgGCCgUCGacguugcUGAGCCc -3'
miRNA:   3'- gAGCGCGU-CG-CGgCGGgAGC-------ACUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.