miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 42949 0.81 0.02818
Target:  5'- gUCGCGCucgccaAGUGCCGCCCcggcaugcgCGUGAGCCu -3'
miRNA:   3'- gAGCGCG------UCGCGGCGGGa--------GCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 27595 0.67 0.32042
Target:  5'- -gCGCGguGUGCCGCUgguaCGaGGGCCu -3'
miRNA:   3'- gaGCGCguCGCGGCGGga--GCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 26686 0.67 0.32042
Target:  5'- uUCGUGCAGCuCgCGCUgCUCGUcGAcGCCg -3'
miRNA:   3'- gAGCGCGUCGcG-GCGG-GAGCA-CU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 694 0.68 0.251858
Target:  5'- gUCGCGCGccacgucauuGCGCCGCaaggcaUCGUGucgacGGCCu -3'
miRNA:   3'- gAGCGCGU----------CGCGGCGgg----AGCAC-----UCGG- -5'
12784 3' -62.3 NC_003387.1 + 21469 0.69 0.233788
Target:  5'- gCUgGCGCAGC-CCGCgCCg-GUcGGGCCg -3'
miRNA:   3'- -GAgCGCGUCGcGGCG-GGagCA-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 10665 0.66 0.343545
Target:  5'- cCUCGaCGCGGCugcgaccacgGCCG-CCUCGgcgGuGGCCg -3'
miRNA:   3'- -GAGC-GCGUCG----------CGGCgGGAGCa--C-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 17723 0.66 0.335705
Target:  5'- --gGCGguGCGCCccgGCCCggccGGGCCg -3'
miRNA:   3'- gagCGCguCGCGG---CGGGagcaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 141 0.7 0.186037
Target:  5'- cCUCGCGauccGCGCCGCCga-GcUGGGCCu -3'
miRNA:   3'- -GAGCGCgu--CGCGGCGGgagC-ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 38292 0.68 0.282461
Target:  5'- -cCGCGCGGCggcacGCUGUCgUCGUcguucguguggucuGAGCCg -3'
miRNA:   3'- gaGCGCGUCG-----CGGCGGgAGCA--------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 51419 0.68 0.258133
Target:  5'- -gCGCcuGCGGCGCCGCC-UCGaacUGcGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGC---ACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 49180 0.71 0.167278
Target:  5'- gUCGCGCAgGCgGCgGCCgUCGacguugcUGAGCCc -3'
miRNA:   3'- gAGCGCGU-CG-CGgCGGgAGC-------ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 34511 0.71 0.155052
Target:  5'- -cCGCuGCGGCGCCGCgauCCUCGggcuGCCc -3'
miRNA:   3'- gaGCG-CGUCGCGGCG---GGAGCacu-CGG- -5'
12784 3' -62.3 NC_003387.1 + 48173 0.66 0.351516
Target:  5'- gUCGCGCAgGCGCagGCCCgcaagGuGCCc -3'
miRNA:   3'- gAGCGCGU-CGCGg-CGGGagca-CuCGG- -5'
12784 3' -62.3 NC_003387.1 + 27429 0.66 0.343545
Target:  5'- -cCGCGCcGaCGUCGCCCUgGcUGAcuGCCc -3'
miRNA:   3'- gaGCGCGuC-GCGGCGGGAgC-ACU--CGG- -5'
12784 3' -62.3 NC_003387.1 + 41980 0.67 0.305662
Target:  5'- -gCGCGCGGagGCCGCCgCggugcucaagCGgugGGGCCg -3'
miRNA:   3'- gaGCGCGUCg-CGGCGG-Ga---------GCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30862 0.69 0.24571
Target:  5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3'
miRNA:   3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 27276 0.69 0.233788
Target:  5'- gUCGCGCGaggagaacgccGCacugGCgGCCCUUGaGAGCCg -3'
miRNA:   3'- gAGCGCGU-----------CG----CGgCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 32618 0.71 0.155052
Target:  5'- gCUCGcCGCgggGGCGCUGaCCCUa-UGAGCCu -3'
miRNA:   3'- -GAGC-GCG---UCGCGGC-GGGAgcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30034 0.68 0.251858
Target:  5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3'
miRNA:   3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 51609 0.67 0.291431
Target:  5'- -gUGCGCccuAGCGUCGCUCaUGUGAccGCCg -3'
miRNA:   3'- gaGCGCG---UCGCGGCGGGaGCACU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.