miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 47800 0.66 0.351516
Target:  5'- -aCGCGCGaCGCCGCgCCgggcaGUGcAGCUa -3'
miRNA:   3'- gaGCGCGUcGCGGCG-GGag---CAC-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 45767 0.66 0.359617
Target:  5'- -gCGCGCuguGGCGCCuGCCCgccgcugCGcaGGCCg -3'
miRNA:   3'- gaGCGCG---UCGCGG-CGGGa------GCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30034 0.68 0.251858
Target:  5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3'
miRNA:   3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.7 0.186037
Target:  5'- -aCG-GCGGCGCCGUCCggUGgcGAGCCg -3'
miRNA:   3'- gaGCgCGUCGCGGCGGGa-GCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 44666 0.7 0.186037
Target:  5'- --aGCGCGG-GCCGCCagCUCGUcGAGCa -3'
miRNA:   3'- gagCGCGUCgCGGCGG--GAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 14822 0.7 0.186037
Target:  5'- -gCGgGCAGCggGUCGCCCUCG-GGGUUg -3'
miRNA:   3'- gaGCgCGUCG--CGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 22107 0.7 0.181297
Target:  5'- gCUUGCGCAGguUGCCGUgCgUCGUGAugugGCCg -3'
miRNA:   3'- -GAGCGCGUC--GCGGCGgG-AGCACU----CGG- -5'
12784 3' -62.3 NC_003387.1 + 31131 0.71 0.176665
Target:  5'- --aGCGCcGCGUCGgCCUCGcUGAuGCCg -3'
miRNA:   3'- gagCGCGuCGCGGCgGGAGC-ACU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 27850 0.71 0.172138
Target:  5'- --gGCGCAGCcaCCGCCCgagGUcGAGCCa -3'
miRNA:   3'- gagCGCGUCGc-GGCGGGag-CA-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 9624 0.71 0.155052
Target:  5'- gUCGCGCucguacccGGCGCCcgucaCCCUgGUGuGCCa -3'
miRNA:   3'- gAGCGCG--------UCGCGGc----GGGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 6879 0.72 0.147097
Target:  5'- gCUCGCGCAggaucuccGCGgCGUCgUCGcGGGCCa -3'
miRNA:   3'- -GAGCGCGU--------CGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 45193 0.72 0.147097
Target:  5'- --gGCaGCAGUGCCGCUCUCGUucacccucGGCCg -3'
miRNA:   3'- gagCG-CGUCGCGGCGGGAGCAc-------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 49141 0.72 0.139147
Target:  5'- aCUCagGCGCcGCcguuaccauucacGCCGCCCUCGUuGAGCg -3'
miRNA:   3'- -GAG--CGCGuCG-------------CGGCGGGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 8277 0.72 0.135861
Target:  5'- cCUCGCGCAGCGCCucguGCgCgUCGgcGGGCa -3'
miRNA:   3'- -GAGCGCGUCGCGG----CG-GgAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 51164 0.76 0.072829
Target:  5'- --gGCGCuuCGCCGUCCUCG-GGGCCg -3'
miRNA:   3'- gagCGCGucGCGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18708 0.75 0.085867
Target:  5'- gUCGCGCAGCGCCagggcgcgGCaCUCGUcGAGCa -3'
miRNA:   3'- gAGCGCGUCGCGG--------CGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 4400 0.76 0.074862
Target:  5'- aCUCGCGCucgcGCGCCGCCUcgauuUCGUcGAGgCg -3'
miRNA:   3'- -GAGCGCGu---CGCGGCGGG-----AGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 41101 0.74 0.095764
Target:  5'- -cUGCGCGGCggucGCgGCCUUCGUGAuGCCc -3'
miRNA:   3'- gaGCGCGUCG----CGgCGGGAGCACU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 47694 1.11 0.000152
Target:  5'- aCUCGCGCAGCGCCGCCCUCGUGAGCCu -3'
miRNA:   3'- -GAGCGCGUCGCGGCGGGAGCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 12333 0.7 0.206101
Target:  5'- -aCGUGCAGCucGCCGCCgaCGUcGAGgCCc -3'
miRNA:   3'- gaGCGCGUCG--CGGCGGgaGCA-CUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.