miRNA display CGI


Results 41 - 60 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 1401 0.69 0.220682
Target:  5'- gUCGCGCucgaaguugugcgaGGCGCCGCCgC-CGacGAGCUg -3'
miRNA:   3'- gAGCGCG--------------UCGCGGCGG-GaGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 52095 0.69 0.228011
Target:  5'- -cCGCgGCGGCgacGCUGCCCUCGcccugcucggccUGAGCg -3'
miRNA:   3'- gaGCG-CGUCG---CGGCGGGAGC------------ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 27276 0.69 0.233788
Target:  5'- gUCGCGCGaggagaacgccGCacugGCgGCCCUUGaGAGCCg -3'
miRNA:   3'- gAGCGCGU-----------CG----CGgCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 21469 0.69 0.233788
Target:  5'- gCUgGCGCAGC-CCGCgCCg-GUcGGGCCg -3'
miRNA:   3'- -GAgCGCGUCGcGGCG-GGagCA-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18309 0.69 0.24571
Target:  5'- -cCGCgGCGGUGgCGCCCggcaacggCGUG-GCCg -3'
miRNA:   3'- gaGCG-CGUCGCgGCGGGa-------GCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 48838 0.69 0.24571
Target:  5'- gCUCgGCGCGacgcacggcGUGCaCGCCCUgGUGcgcAGCCg -3'
miRNA:   3'- -GAG-CGCGU---------CGCG-GCGGGAgCAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 30862 0.69 0.24571
Target:  5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3'
miRNA:   3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 12411 0.69 0.24571
Target:  5'- aCUC-CGguGCGCCGCUgUgG-GAGCUg -3'
miRNA:   3'- -GAGcGCguCGCGGCGGgAgCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 31208 0.69 0.24571
Target:  5'- aCUCaGCGCAGCgGCCGgC-UCGUGcAGCg -3'
miRNA:   3'- -GAG-CGCGUCG-CGGCgGgAGCAC-UCGg -5'
12784 3' -62.3 NC_003387.1 + 18962 0.69 0.24571
Target:  5'- -aCGCucGCGGCGCCGCCgUUGcccuuGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 15268 0.68 0.249384
Target:  5'- --gGCGCAGCGCCGCCagcauggcaaccgUCGgcggcuugGGGCUc -3'
miRNA:   3'- gagCGCGUCGCGGCGGg------------AGCa-------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 45544 0.68 0.251238
Target:  5'- -cCGUGCGGCaaggcgauccGCCGCCagCUCGUcggcacggccgagGAGCCg -3'
miRNA:   3'- gaGCGCGUCG----------CGGCGG--GAGCA-------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 28577 0.68 0.251858
Target:  5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3'
miRNA:   3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 39746 0.68 0.251858
Target:  5'- gCUCGuCGuCGGUgGCCGCCCg-GUacGAGCCg -3'
miRNA:   3'- -GAGC-GC-GUCG-CGGCGGGagCA--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 3048 0.68 0.251858
Target:  5'- --gGCGCAGgCGuucCCGCCCgccUCGgucGAGCCg -3'
miRNA:   3'- gagCGCGUC-GC---GGCGGG---AGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 694 0.68 0.251858
Target:  5'- gUCGCGCGccacgucauuGCGCCGCaaggcaUCGUGucgacGGCCu -3'
miRNA:   3'- gAGCGCGU----------CGCGGCGgg----AGCAC-----UCGG- -5'
12784 3' -62.3 NC_003387.1 + 30034 0.68 0.251858
Target:  5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3'
miRNA:   3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 12196 0.68 0.258133
Target:  5'- cCUCGgGCAG-GUCGCUgCUCGgugccGGGCCa -3'
miRNA:   3'- -GAGCgCGUCgCGGCGG-GAGCa----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 51419 0.68 0.258133
Target:  5'- -gCGCcuGCGGCGCCGCC-UCGaacUGcGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGC---ACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 48390 0.68 0.264534
Target:  5'- gUUGCGCugguGCGCC-UUCUCGgcguUGAGCCa -3'
miRNA:   3'- gAGCGCGu---CGCGGcGGGAGC----ACUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.