miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 8459 0.67 0.327997
Target:  5'- -cCGCGCGGCGCgGUgUUUGcUGcaGGCCa -3'
miRNA:   3'- gaGCGCGUCGCGgCGgGAGC-AC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 22654 0.67 0.327997
Target:  5'- gCUCGCccCGGCgGCCGUCagggcgcgCUCGUGGGCg -3'
miRNA:   3'- -GAGCGc-GUCG-CGGCGG--------GAGCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 44523 0.67 0.327997
Target:  5'- uUCGUGCcGgGCCGCCCggCGccgcaGGGCUc -3'
miRNA:   3'- gAGCGCGuCgCGGCGGGa-GCa----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 27595 0.67 0.32042
Target:  5'- -gCGCGguGUGCCGCUgguaCGaGGGCCu -3'
miRNA:   3'- gaGCGCguCGCGGCGGga--GCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 26686 0.67 0.32042
Target:  5'- uUCGUGCAGCuCgCGCUgCUCGUcGAcGCCg -3'
miRNA:   3'- gAGCGCGUCGcG-GCGG-GAGCA-CU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 26809 0.67 0.313714
Target:  5'- -cCGCGCugguggucggugagcGCGCCGCCCUgGac-GCCg -3'
miRNA:   3'- gaGCGCGu--------------CGCGGCGGGAgCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 29310 0.67 0.312975
Target:  5'- -aUGaCGCAgGCGCCGCgCUUGUcGGGCa -3'
miRNA:   3'- gaGC-GCGU-CGCGGCGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 33558 0.67 0.305662
Target:  5'- -cCGUGCGG-GCCgcGCCCUCGacagcgucgacGAGCCa -3'
miRNA:   3'- gaGCGCGUCgCGG--CGGGAGCa----------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 4768 0.67 0.305662
Target:  5'- gCUCGCGguGCuucGCgGCCCacacggcgUCGUGcccauGCCu -3'
miRNA:   3'- -GAGCGCguCG---CGgCGGG--------AGCACu----CGG- -5'
12784 3' -62.3 NC_003387.1 + 4187 0.67 0.305662
Target:  5'- cCUCgGCGCGGUGCUucgGCCaccgCGUGucGGCCc -3'
miRNA:   3'- -GAG-CGCGUCGCGG---CGGga--GCAC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 30532 0.67 0.305662
Target:  5'- gCUUGgGUGGCccacccgauaccGCCGCCCcCGccUGGGCCg -3'
miRNA:   3'- -GAGCgCGUCG------------CGGCGGGaGC--ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 41980 0.67 0.305662
Target:  5'- -gCGCGCGGagGCCGCCgCggugcucaagCGgugGGGCCg -3'
miRNA:   3'- gaGCGCGUCg-CGGCGG-Ga---------GCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 37375 0.67 0.305662
Target:  5'- gUCGgGCGGCGgCGCCCcgcugUCGguaucGGGCa -3'
miRNA:   3'- gAGCgCGUCGCgGCGGG-----AGCa----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 34146 0.67 0.298481
Target:  5'- aCUCGacgaGCaccagGGCGUCGCCCUCG---GCCu -3'
miRNA:   3'- -GAGCg---CG-----UCGCGGCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 36828 0.67 0.291431
Target:  5'- gCUCGgGguGCggGCUGUCCUCGUccucGGGCa -3'
miRNA:   3'- -GAGCgCguCG--CGGCGGGAGCA----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 23841 0.67 0.291431
Target:  5'- -cCGCGCcuaAGcCGCCGCagUCG-GGGCCg -3'
miRNA:   3'- gaGCGCG---UC-GCGGCGggAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 51609 0.67 0.291431
Target:  5'- -gUGCGCccuAGCGUCGCUCaUGUGAccGCCg -3'
miRNA:   3'- gaGCGCG---UCGCGGCGGGaGCACU--CGG- -5'
12784 3' -62.3 NC_003387.1 + 11324 0.67 0.291431
Target:  5'- aCUCGUGCuGCGCCucggucGCCCggCGcucGGCCu -3'
miRNA:   3'- -GAGCGCGuCGCGG------CGGGa-GCac-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 18219 0.67 0.288647
Target:  5'- ---uCGCGGCGCCGCagcggcgggcguaCUCGUaGGCCg -3'
miRNA:   3'- gagcGCGUCGCGGCGg------------GAGCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 39057 0.68 0.284512
Target:  5'- --aGCGUcGaCGgCGCCCUCGgcgaccGAGCCg -3'
miRNA:   3'- gagCGCGuC-GCgGCGGGAGCa-----CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.